Bioconductor cheat sheet
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Aug 26, 2024 - HTML
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microarray
Here are 86 public repositories matching this topic...
Python library to access Gene Expression Omnibus Database (GEO)
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Jul 27, 2024 - Jupyter Notebook
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
workflow
rna-seq
pipeline
nextflow
shiny
deseq2
microarray
chip-seq
atac-seq
differential-expression
limma
gsea
nf-core
differential-abundance
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Oct 30, 2024 - Nextflow
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
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Aug 23, 2024 - R
R package for normalizing RNA-seq data to make them comparable to microarray data.
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May 4, 2023 - R
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
machine-learning
bioinformatics
analysis
cancer
gene-expression
rnaseq
microarray
normalization
supplement
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Mar 20, 2023 - HTML
Cross-platform GUI desktop application for making biological heatmaps
lightweight
c-plus-plus
rna-seq
opengl
heatmap
computational-biology
gui-application
microarray
r-programming
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Nov 10, 2022 - C
Microarray Analysis Pipeline in Python
pipeline
microarray
ncbi-submission
differential-expression
enrichment-analysis
ncbi-geo
ncbi-database
microarray-studies
differentially-expressed-genes
microarray-experiments
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Aug 1, 2019 - Jupyter Notebook
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
package
r
analysis
hpc
notebook
dna
expression
microarray
rna
reproducibility
large-scale
affymetrix
copy-number
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Feb 18, 2024 - R
analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)
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Aug 1, 2021 - Python
UNet 2.0 - Pytorch implementation of the U-Net 2.0 for image semantic segmentation, with processing blocks for noisy images
cnn
pytorch
microarray
image-segmentation
unet
unet-pytorch
unet-image-segmentation
unet-model
unet2
microarray-image-segmentation-cnn
microarray-deep-learning
image-segmenation-unet
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Oct 4, 2019 - Python
Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia
bioinformatics
microarray
microarray-data
aml
acute-myeloid-leukemia
geoparse
microarray-data-analysis
genetic-expression-omnibus
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May 27, 2021 - Python
Collection of gene expression datasets
rna-seq
gene-expression
microarray
microarray-data
datasets
microarray-data-analysis
rna-seq-datasets
transciptomics
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Oct 1, 2023
Latex scripts to compile my PhD thesis
rna-seq
microarray
splines
ridge-regression
multivariate-timeseries
cervical-cancer
gene-regulatory-network-inference
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Apr 9, 2024 - TeX
SAGA: Simulated annealing aided genetic algorithm for gene selection from microarray data
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Sep 27, 2023 - Jupyter Notebook
Genomic data manipulation tool
bam-files
bioinformatics
genomics
genome
genetics
microarray
wgs
genome-analysis
whole-genome-sequencing
sam-files
cram-files
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Oct 6, 2024 - Python
R package for visualization of omics data
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Oct 11, 2024 - R
bioTEA - A user friendly tool to perform transcript expression analysis
python
linux
docker
microarray
command-line-tool
transcriptomics
differential-gene-expression
bioinformatics-tool
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Oct 1, 2024 - Python
bimodal DNN for NSCLC patient overall survival prediction
bioinformatics
deep-neural-networks
deep-learning
microarray
biomarkers
clinical-data
prognostic-biomarkers
overall-survival-prediction
bimodal-multicast
non-small-cell-lung-cancer
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Updated
May 20, 2020
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