Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
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Updated
Mar 20, 2024 - R
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copy-number
Here are 14 public repositories matching this topic...
Copy number calling and variant classification using targeted short read sequencing
copy-number
bioconductor-package
cell-free-dna
tumor-purity
tumor-heterogeneity
tumor-mutational-burden
loh
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Updated
Sep 13, 2024 - R
Lifterover copy number segments in whole
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Feb 6, 2024 - Python
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
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Mar 27, 2020 - R
Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data.
somatic-variants
cancer-genomics
expectation-maximization
gaussian-mixture-models
maximum-likelihood-estimation
copy-number
bayesian-information-criterion
auto-correlation
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Updated
Mar 6, 2024 - C++
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
package
r
analysis
hpc
notebook
dna
expression
microarray
rna
reproducibility
large-scale
affymetrix
copy-number
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Updated
Feb 18, 2024 - R
Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)
r
genomics
bayesian-methods
bayesian-inference
mcmc
probabilistic-graphical-models
copy-number-variation
rcpparmadillo
bayesian-nonparametric-models
probabilistic-models
copy-number
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Updated
Oct 13, 2018 - C++
R package: Parent-specific Copy-number Estimation Pipeline using HT-Seq Data
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Updated
Feb 20, 2021 - R
CNprep Package - Pre-process DNA Copy Number (CN) Data for Detection of CN Events
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Updated
May 19, 2022 - R
Processing DNA Copy Number (CN) Data for Detection of CN Events
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Updated
May 18, 2022 - R
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