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PyWGCNA Public
Forked from mortazavilab/PyWGCNAPyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
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pb-16S-nf Public
Forked from PacificBiosciences/HiFi-16S-workflowNextflow pipeline to analyze PacBio HiFi full-length 16S data
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pb-human-wgs-workflow-snakemake Public
Forked from PacificBiosciences/pb-human-wgs-workflow-snakemakeWorkflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
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paraphase Public
Forked from PacificBiosciences/paraphaseHiFi-based SMN1 and SMN2 caller
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simCAS Public
Forked from Chen-Li-17/simCASsimCAS: an embedding-based method for simulating single-cell chromatin accessibility sequencing data
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google-research Public
Forked from google-research/google-researchGoogle Research
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PyDESeq2 Public
Forked from owkin/PyDESeq2A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
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scRNA-seq_notes Public
Forked from mdozmorov/scRNA-seq_notesA list of scRNA-seq analysis tools
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kent Public
Forked from ucscGenomeBrowser/kentUCSC Genome Browser source tree. Stable branch: "beta".
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single_cell_pipeline Public
Forked from shahcompbio/single_cell_pipelineSingle Cell Analysis Automated Workflow
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neuromaps Public
Forked from netneurolab/neuromapsA toolbox for comparing brain maps
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taxonium Public
Forked from theosanderson/taxoniumExplore very large trees in the browser
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usher Public
Forked from yatisht/usherUltrafast Sample Placement on Existing Trees
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scEvoNet Public
Forked from monsoro/scEvoNetscEvoNet is a tool for generation a cell type - gene program network between species or different time points in the same organism.
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cov2tree Public
Forked from sandersonlab/cov2treeCov2Tree website, based on Taxodium
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yahs Public
Forked from sanger-tol/yahsYet another Hi-C scaffolding tool
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Monopogen Public
Forked from KChen-lab/MonopogenSingle Cell Population Genetics and Association Analysis Tool
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models-1 Public
Forked from kipoi/modelsModel zoo for genomics
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Awesome-Bioinformatics Public
Forked from danielecook/Awesome-BioinformaticsA curated list of awesome Bioinformatics libraries and software.
2 UpdatedJul 15, 2022 -
HaploSync Public
Forked from andreaminio/HaploSyncTools for haplotype-wise reconstruction of pseudomolecules
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AnnotationPipeline-EVM_based-DClab Public
Forked from andreaminio/AnnotationPipeline-EVM_based-DClabCantù Lab @ UC Davis - Annotation pipeline - EVM based
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rna-tools Public
Forked from mmagnus/rna-tools🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
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mosdepth Public
Forked from brentp/mosdepthfast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
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ldsc Public
Forked from bulik/ldscLD Score Regression (LDSC)
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hts-specs Public
Forked from samtools/hts-specsSpecifications of SAM/BAM and related high-throughput sequencing file formats
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htseq Public
Forked from htseq/htseqHTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
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STAR-Fusion Public
Forked from STAR-Fusion/STAR-FusionSTAR-Fusion codebase
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covtobed Public
Forked from telatin/covtobed⛰ covtobed | Convert the coverage track from a BAM file into a BED file
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picard Public
Forked from broadinstitute/picardA set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
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ML-YouTube-Courses Public
Forked from dair-ai/ML-YouTube-CoursesA repository to index and organize the latest machine learning courses found on YouTube.
1 UpdatedFeb 9, 2022
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