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Evaluation method for MRI brain tissue abnormalities segmentation study

Published: 15 July 2011 Publication History

Abstract

Segmentation poses one of the most challenging problems in medical imaging. Segmentation of Magnetic Resonance Imaging (MRI) images is an important part of brain imaging research as it can facilitates the neurological diseases diagnosis. However, there are few limitations in evaluating the segmentation accuracy due to difficulties in obtaining the ground truth. This research proposes an evaluation method for brain tissue abnormalities segmentation study. Controlled experimental data called mosaic images are used as the testing data. The data is designed which that prior knowledge of the size of the abnormalities is known. It is done by cutting various shapes and sizes of various abnormalities and pasting it onto normal brain tissues, where the tissues and the background are divided into three different intensities. The knowledge of the size of abnormalities by number of pixels are then used as the ground truth to compare with the various segmentation results. The validation of segmentation was done with fifty data of each category using methods of Particle Swarm Optimization (PSO), Adaptive Network-based Fuzzy Inference System (ANFIS) and Fuzzy c-Means (FCM), where the evaluation for each technique exhibits some variation of results. Therefore, the proposed evaluation method of ground truth formation called image mosaicing is found to be reasonable and acceptable to use as it produces potential solutions to the current difficulties in evaluating the brain tissue abnormalities segmentation outcome.

References

[1]
N. R. Pal, and S. K. Pal, A Review on Image Segmentation Techniques, Pattern Recognition, Vol. 26, Issue 9, pp. 1277-1294. 1993.
[2]
H. Nayak, M. M. Amini, P. T. Bibalan, and N. Bacon, Medical Image Segmentation, June 12, 2008.
[3]
S. Ibrahim, N.E.A Khalid, and M. Manaf, Empirical Study of Brain Segmentation using Particle Swarm Optimization, International Conference on Information Retrieval and Knowledge Management, CAMP'10, pp. 235- 239, 2010.
[4]
N.E.A. Khalid, S. Ibrahim, M. Manaf, and U.K. Ngah, Seed-Based Region Growing Study for Brain Abnormalities Segmentation, International Symposium on Information Technology 2010 (ITSim 2010), Vol. 2, pp. 856-860 2010.
[5]
R. Ganesan and S. Radhakrishnan, Segmentation of Computed Tomography Brain Images using Genetic Algorithm, International Journal of Soft Computing, Vol. 4, Issue 4, pp. 157-161, 2009.
[6]
N.M. Noor, N.E.A. Khalid, R. Hassan, S. Ibrahim, and I.M. Yassin, Adaptive Neuro-Fuzzy Inference System for Brain Abnormality Segmentation, 2010 IEEE Control and System Graduate Research Colloquium, ICSGRC 2010, 2010.
[7]
C. Wasserthal, K. Engel, K. Rink, and A. Brechman, Automatic segmentation of the cortical grey and white matter in MRI using Region Growing Approach based on Anatomical Knowledge, Springer Berlin Heidelberg, ISBN978-3-540-78639-9. 2008.
[8]
K. M. Iftekharuddin, J. Zheng, M. A. Islam, R. J., and F. Lanningham, Brain tumor detection in MRI: technique and statistical validation, Fortieth Asilomar Conference on Signals, Systems and Computers, Oct. 29 2006-Nov. 1 2006, pp. 1983-1987, 2006.
[9]
S. Shen, W. Snadham, M. Granat, and A. Sterr., MRI Fuzzy segmentation of brain tissue using neighborhood attraction with neural network optimization, IEEE Transactions on Information Technology in Biomedicine, Vol. 9, Issue 3, Sept. 2005, pp. 459-467, 2005.
[10]
M. G. Linguraru, M. Á. G. Ballester, N. Ayache, Deformable Atlases for the Segmentation of Internal Brain Nuclei in Magnetic Resonance Imaging, International Journal of Computers, Communications & Control, 2007(II): pp. 26-36, 2007.
[11]
S. Bouix, M. Martin-Fernandez, L. Ungar, M. Nakamura, M. Koo, R. McCarley, and M. Shenton, On evaluating brain tissue classifiers without a ground truth, Neuroimage 07, 447458, 2007.
[12]
C. Reosenberger, and K. Chehdi, Genetic Fusion: Application to Multicomponents Image Segmentation, Proceedings ICASSP, 4: pp. 2223-2226, 2000.
[13]
Y.J. Zhang, and H.T. Luo Optimal Selection of Image Segmentation Algorithms based on Performance Evaluation, Optical Engineering, Vol. 39, Issue 6, pp. 1450-1456, 2000.
[14]
R. Unnikrishnan, C. Pantofaru, and M. Hebert, A Measure for Objective Evaluation of Image Segmentation Algorithms, Workshop on Empirical Evaluation Methods in Computer Vision, IEEE Conference on Computer Vision and Pattern Recognition (CVPR '05), June 2005, 2005.
[15]
S. Chabrier, H. Lauren, and B. Emile, Performance Evaluation of Image Segmentation Application to Parameters Fitting, Proceedings of European Signal Processing, 2005.
[16]
V. Grau, A.U.J. Mewes, M. Alcaniz, R. Kikinis, S.K. Warfield, Improved watershed transform for medical image segmentation using prior information, IEEE Trans. Med. Imaging, Vol. 23, Issue 4, pp. 447-458, 2004.
[17]
D.E Rex, D.W. Shattuck, R.P. Woods, K.L. Narr, E. Luders, K. Rehm, S.E. Stolzner, D.A. Rottenberg, A.W. Toga, A meta-algorithm for brain extraction in MRI. NeuroImage 23, pp. 625-627, 2004.
[18]
M. Prastawa, E. Bullita, G. Gerig, Simulation of Brain Tumors in MR Images for Evaluation of Segmentation Efficacy, Medical Image Analysis, Elsevier, Vol. 13, Issue 2, April 2009, pp. 29-311, 2009.
[19]
X. Lin, T. Qiu, F. Nicolier, S. Ruan, Automatic Hippocampus Segmentation from Brain MRI Images, International Journal of Computer Information Systems and Industrial Management Applications, Vol. 2, pp. 1-10, 2010.
[20]
A.P. Zijdenbos, R. Forghani, A.C. Evans, Automatic "pipeline" analysis of 3-D MRI data for clinical trials: application to multiple sclerosis, IEEE Trans. Med. Imag., Vol. 21, Issue 10, pp. 1280-1291, 2002.
[21]
S.K. Warfield, K.H. Zou, W.M. Wells, Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation, IEEE Trans. Med. Imaging, Vol. 23, Issue 7, pp. 903-921, 2004.
[22]
Y. Zhang, M. Brady, S. Smith, Segmentation of brain MR images through a hidden Markov random field model and the expectation maximization algorithm, IEEE Trans. Med. Imag, Vol. 20, Issue 1, pp. 45-57, 2001.
[23]
J. Ashburner, and K. Friston, Spatial normalization using basis functions, In: R.S.J. Frackowiak, K.J. Friston, C. Frith, R. Dolan, K.J. Friston, C.J. Price, S. Zeki, J. Ashburner, and W. Penny, (Eds.), Human Brain Function, 2nd edition, Academic Press, 2003.
[24]
J.D. Klingensmith, R. Shekhar, and D.G. Vince, Evaluation of threedimensional segmentation algorithms for the identification of luminal and medial-adventitial borders in intravascular ultrasound images, IEEE Trans. Med. Imag., Vol.19, Issue 10, pp. 996-1011, 2000.
[25]
S.L. Victor V.I. Denis, Seamless Mosaicing of Image-Based Texture Maps, IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2007.
[26]
Hofmann, J. Puzicha, J.M. Buhmann, An Optimization Approach to Un- supervised Hierarchical Texture Segmentation, ICIP, 1997.
[27]
L. Wolf, Xiaolei Huang, Ian Martin, Dimitris Metaxas, Patch-Based Texture Edges and Segmentation, Proceedings of the European Conference on Computer Vision (ECCV), May 2006.
[28]
A. Baumberg, Blending Images for Texturing 3D Models, Proceedings of the British Machine Vision Conference (BMVC), 2002.
[29]
H. Lensch, W. Heidrich, H. Seidel. A Silhouette-Based Algorithm for Texture Registration and Stitching. Journal of Graphical Models, Vol. 63, No. 4, pp. 245- 262, 2001.

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Published In

cover image Guide Proceedings
Proceedings of the 15th WSEAS international conference on Computers
July 2011
534 pages
ISBN:9781618040190

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World Scientific and Engineering Academy and Society (WSEAS)

Stevens Point, Wisconsin, United States

Publication History

Published: 15 July 2011

Author Tags

  1. evaluation method
  2. magnetic resonance imaging (MRI)
  3. medical imaging
  4. mosaicing
  5. segmentation

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