A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
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Updated
Sep 28, 2024 - Python
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Automatic Input Documentation for WDL workflows
Workflow Description Language developer tools & local runner
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
SFN-WDL infrastructure for pipeline execution - a template repository and Terraform module for SFN-WDL based projects
Configure workflow/pipeline tests using yaml files.
Tools to validate and test WDL-based repositories. To be used as part of CI/CD pipelines
CLI for interacting with Cromwell servers
Create WDL documentation using Markdown.
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
merge multiple WDLs
An opinionated Cromwell orchestration manager.
A web-based visualization tool to view (inter and inner) dependencies of WDL workflows.
[Experimental] Workflow Definition Language (WDL) to CWL
Add a description, image, and links to the wdl topic page so that developers can more easily learn about it.
To associate your repository with the wdl topic, visit your repo's landing page and select "manage topics."