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common-workflow-language

CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.

Here are 61 public repositories matching this topic...

common-workflow-language

common-workflow-language / common-workflow-language

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

science workflow containers common-workflow-language cwl workflows commonwl sciworkflows

Updated Aug 10, 2024
Common Workflow Language

DataBiosphere / toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

python kubernetes aws workflow pipeline slurm mesos wdl common-workflow-language gridengine cwl workflow-description-language

Updated Nov 1, 2024
Python

cwltool

common-workflow-language / cwltool

Common Workflow Language reference implementation

science containers common-workflow-language cwl workflows commonwl sciworkflows

Updated Nov 1, 2024
Python

rabix / composer

Visual and code editor for Common Workflow Language

editor ide common-workflow-language cwl

Updated Jan 11, 2023
TypeScript

Barski-lab / cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

workflow containers common-workflow-language cwl dag commonwl cwl-airflow cwl-descriptor

Updated Oct 25, 2023
Python

rabix / bunny

[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0

java docker workflow executor common-workflow-language cwl commonwl

Updated Nov 18, 2020
Common Workflow Language

benten

rabix / benten

A language server for Common Workflow Language

editor workflow language-server ide common-workflow-language cwl cwl-documents

Updated Dec 6, 2023
Python

rabix / cwl-ts

Typescript data model for Common Workflow Language

workflow typescript common-workflow-language cwl

Updated Mar 3, 2023
TypeScript

sbg / sevenbridges-python

SevenBridges Python Api bindings

bioinformatics api-client sevenbridges common-workflow-language rest-client

Updated Oct 18, 2024
Python

cwlviewer

common-workflow-language / cwlviewer

A web application to view and share Common Workflow Language workflows

java workflow common-workflow-language cwl workflows

Updated Oct 30, 2024
Java

user_guide

common-workflow-language / user_guide

The CWL v1.0 - v1.2 user guide

workflow common-workflow-language cwl workflows

Updated Oct 20, 2024
Common Workflow Language

PMCC-BioinformaticsCore / janis

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

python workflow wdl common-workflow-language cwl workflow-description-language

Updated Sep 17, 2023
Python

cwl-utils

common-workflow-language / cwl-utils

Python utilities for CWL

common-workflow-language cwl commonwl

Updated Nov 1, 2024
Python

sbg / sevenbridges-r

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

cloud bioinformatics api-client bioconductor sevenbridges common-workflow-language

Updated Jan 28, 2022
R

workflux / workflUX

An open-source, cloud-ready web application for simplified deployment of big data workflows.

workflow bioinformatics bigdata web-application common-workflow-language workflows

Updated Jul 9, 2024
JavaScript

crim-ca / weaver

Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package

workflow web-application remote-execution common-workflow-language ogc wps cwl ems ades web-processing-service

Updated Oct 30, 2024
Python

otiai10 / cwl.go

CWL (and input file) parser for Golang, used by github.com/otiai10/yacle

golang bioinformatics common-workflow-language cwl

Updated Mar 19, 2019
Go

EBI-Metagenomics / pipeline-v5

This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

workflow metagenomics common-workflow-language cwl metagenomic-analysis metagenomic-classification metagenomic-data amplicon-pipeline cwl-workflow cwl-descriptions metagenomic-pipeline wgs-analysis mgnify

Updated Oct 24, 2024
HTML

sbg / sevenbridges-cwl

Seven Bridges Python library for programatic generation of CWL workflows.

python bioinformatics sevenbridges common-workflow-language cwl

Updated Oct 26, 2022
Python

otiai10 / yacle

Yet Another CWL Engine by Golang

bioinformatics common-workflow-language cwl

Updated Mar 19, 2019
Go

Created by Peter Amstutz, John Chilton, Michael R. Crusoe, Nebojša Tijanić, and the CWL Community

Released January 2015

Followers: 13 followers
Organization: common-workflow-language
Website: www.commonwl.org
Wikipedia: Wikipedia