MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
📚 Tools and databases for analyzing HLA and VDJ genes.
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
Post-analysis of immune repertoire sequencing data
A collaborative review of the emerging COVID-19 literature. Join the chat here:
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
Precision HLA typing from next-generation sequencing data
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
Python package and command line tool for epitope prediction
An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
A RepSeq processing swiss-knife
A Python library for reading and writing Flow Cytometry Standard (FCS) files
simpler single cell RNAseq data clustering
A data-centric flow/mass cytometry automated analysis framework
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
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