An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Versatile open-source tool for microbiome analysis

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

Randomly subsample sequencing reads or alignments

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

A collection of scripts and notes related to genomics and bioinformatics

Viral genomics analysis pipelines

A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

Pipeline to fetch metadata and raw FastQ files from public databases

Detect and visualize target mutations by scanning FastQ files directly

NGLess: NGS with less work

An efficient FASTQ manipulation suite

💾 📃 "Reads to report" for public health and clinical microbiology

🚀 seqfu - Sequece Fastx Utilities

FastQC port to Qt5: A quality control tool for high throughput sequence data.