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antimicrobial-genes-annotation

Here are 4 public repositories matching this topic...

fmalmeida / bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

Updated Nov 14, 2024
Nextflow

beiko-lab / arete

AMR/VF LGT focused bacterial genomics analysis workflow

pipeline nextflow reproducible-research metagenomics virulence-factor recombination pangenomics rgi antimicrobial-resistance lateral-gene-transfer mobile-genetic-elements bacterial-genome-analysis antimicrobial-genes-annotation genomic-islands-prediction poppunk

Updated Aug 8, 2024
Python

Darcy220606 / AMPcombi

AMPcombi parses and filters results from AMP prediction tools

amp genes antimicrobial-peptides antimicrobial-genes-annotation

Updated Nov 29, 2024
Python

IbrahimElzahaby / Erasmus_MC_Internship

Plasmidome analysis to track the transfer route of AMR genes in bacteria

fasta-sequences rgi antimicrobial-resistance-genes prokka plasmidfinder abricate virulence-genes antimicrobial-genes-annotation amr-detection refseq-genbank panaroo

Updated Oct 15, 2023
Jupyter Notebook

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