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Scientific Filesystem

formats and tools for reproducible science

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  1. snakemake.scif snakemake.scif Public

    Forked from fbartusch/snakemake_tutorial

    Tutorial with snakemake and Scientific Filesystem

    HTML 16 2

  2. sci-f.github.io sci-f.github.io Public

    The Scientific Filesystem Specification and Documentation

    CSS 12 6

  3. hello-world.scif hello-world.scif Public

    A hello world example for a scientific filesystem

    7 1

  4. scif-go scif-go Public

    golang implementation of the Scientific Filesystem

    Go 6

  5. metrics.scif metrics.scif Public

    an example scientific filesystem to provide custom metrics and helpers for a container

    Shell 4

  6. jobmaker.scif jobmaker.scif Public

    An example container with modules to run an executable in different environments / with different job managers

    Makefile 4

Repositories

Showing 10 of 15 repositories
  • sci-f.github.io Public

    The Scientific Filesystem Specification and Documentation

    sci-f/sci-f.github.io’s past year of commit activity
    CSS 12 AGPL-3.0 6 4 0 Updated Nov 9, 2023
  • snakemake.scif Public Forked from fbartusch/snakemake_tutorial

    Tutorial with snakemake and Scientific Filesystem

    sci-f/snakemake.scif’s past year of commit activity
    HTML 16 4 1 0 Updated Nov 11, 2020
  • builder Public

    a template ready to go to easily build, test, and deploy reproducible SCIF containers!

    sci-f/builder’s past year of commit activity
    Dockerfile 1 7 0 0 Updated Sep 16, 2020
  • scif-go Public

    golang implementation of the Scientific Filesystem

    sci-f/scif-go’s past year of commit activity
    Go 6 MPL-2.0 0 3 0 Updated Jun 5, 2020
  • apps Public

    Modular application recipes for the Scientific Filesystem (SCIF)

    sci-f/apps’s past year of commit activity
    CSS 3 BSD-3-Clause 3 5 0 Updated Apr 10, 2020
  • tob Public Forked from opencontainers/tob

    Technical Oversight Board (TOB)

    sci-f/tob’s past year of commit activity
    0 60 0 0 Updated Apr 3, 2019
  • nextflow-scif Public Forked from BU-ISCIII/nextflow-scif

    This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

    sci-f/nextflow-scif’s past year of commit activity
    HTML 0 3 0 0 Updated Aug 4, 2018
  • jobmaker.scif Public

    An example container with modules to run an executable in different environments / with different job managers

    sci-f/jobmaker.scif’s past year of commit activity
    Makefile 4 BSD-3-Clause 0 0 0 Updated Jan 26, 2018
  • metrics.scif Public

    an example scientific filesystem to provide custom metrics and helpers for a container

    sci-f/metrics.scif’s past year of commit activity
    Shell 4 BSD-3-Clause 0 0 0 Updated Jan 26, 2018
  • hello-world.scif Public

    A hello world example for a scientific filesystem

    sci-f/hello-world.scif’s past year of commit activity
    7 AGPL-3.0 1 0 0 Updated Jan 24, 2018
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