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@opencobra

openCOBRA

Community driven constraint-based reconstruction, analysis and modelling of biology

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  1. cobrapy cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    Python 465 218

  2. cobratoolbox cobratoolbox Public

    The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

    MATLAB 251 313

  3. COBRA.jl COBRA.jl Public

    High-level, high-performance, constraint-based reconstruction and analysis in Julia

    Julia 62 31

  4. MASS-Toolbox MASS-Toolbox Public

    Mass Action Stoichiometric Simulation (MASS) Toolbox

    Mathematica 11 8

  5. MATLAB.devTools MATLAB.devTools Public

    MATLAB Development Tools

    MATLAB 27 34

  6. memote memote Public

    memote – the genome-scale metabolic model test suite

    HTML 127 27

Repositories

Showing 10 of 36 repositories
  • cobratoolbox Public

    The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

    opencobra/cobratoolbox’s past year of commit activity
    MATLAB 251 313 114 (1 issue needs help) 7 Updated Nov 4, 2024
  • COBRA.tutorials Public

    Repository of tutorials for The COBRA Toolbox

    opencobra/COBRA.tutorials’s past year of commit activity
    MATLAB 18 47 7 1 Updated Nov 4, 2024
  • swiglpk Public

    Simple swig bindings for the GNU Linear Programming Kit

    opencobra/swiglpk’s past year of commit activity
    Python 28 GPL-3.0 10 2 4 Updated Nov 1, 2024
  • escher Public
    opencobra/escher’s past year of commit activity
    JavaScript 0 0 0 0 Updated Oct 25, 2024
  • COBRA.models Public

    Set of models used for testing COBRA code in continuous integration environments

    opencobra/COBRA.models’s past year of commit activity
    Julia 0 1 0 1 Updated Oct 9, 2024
  • COBRA.papers Public

    Repository for scripts related to reproducing the results of an individual publication

    opencobra/COBRA.papers’s past year of commit activity
    MATLAB 8 13 1 1 Updated Sep 28, 2024
  • MATLAB.devTools Public

    MATLAB Development Tools

    opencobra/MATLAB.devTools’s past year of commit activity
    MATLAB 27 GPL-3.0 34 2 0 Updated Sep 27, 2024
  • reconstructor Public

    Open source tool for biochemical network reconstruction

    opencobra/reconstructor’s past year of commit activity
    Java 1 GPL-3.0 1 0 0 Updated Sep 23, 2024
  • cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    opencobra/cobrapy’s past year of commit activity
    Python 465 GPL-2.0 218 64 (4 issues need help) 14 Updated Sep 19, 2024
  • optlang Public

    optlang - sympy based mathematical programming language

    opencobra/optlang’s past year of commit activity
    Python 248 Apache-2.0 51 34 2 Updated Sep 9, 2024
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