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R package for modeling single cell UMI expression data using regularized negative binomial regression

A preprocessing tool to merge gene count files

NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization

A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries

A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries

a web-based R shiny application that wraps DESeq2 R package

main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3

This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.