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1. BEAST-FLOW BEAST-FLOW Public

   Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.

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2. DiVirusity DiVirusity Public

   Quantify viral genetic diversity within hosts from NGS data (paired-end raw reads) without needing to reconstruct full-length haplotypes.

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3. covflo covflo Public

   Forked from BCCDC-PHL/covflo

   Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.

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4. fluflo fluflo Public

   Forked from BCCDC-PHL/fluflo

   Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.

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5. SNPGenie SNPGenie Public

   Forked from chasewnelson/SNPGenie

   Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

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6. SNPerr SNPerr Public

   Determine read depth and variant frequency thresholds to distinguish NGS sequencing errors from true SNPs. Simulates effect of changing per-site read depth and variant frequency on accuracy of gene…

   Python