Optical Design Software

This repository contains software that was developed for the management of bioimage data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.

Chord charts made with LilyPond.

🔥 Obsessed with creating Ignition 🔥

Function to work with spectroscopy spectra files.

Windows GUI Automation with Python (based on text properties)

A new markup-based typesetting system that is powerful and easy to learn.

Wi-Fi controller compatible with various Lego Lighting kits

Simple tool that can forward file system events to other machine, such as virtual machines with shared folders

A utility to help detect file changes in docker containers where filesystem is mounted by NFS. It's much more powerful and faster than other similar solutions.

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

Schema and generated objects for biolink data model and upper ontology

High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy

Commands used to set up automatic imports to OMERO from microscopes

DALL·E Mini - Generate images from a text prompt

3D Printed Microscope

A fast, memory efficient hash map for C++

A simple Arduino Emulator that can be used in Windows, Linux or OS/X

A C++, header-only library for constructing JSON and JSON-like data formats, with JSON Pointer, JSON Patch, JSON Schema, JSONPath, JMESPath, CSV, MessagePack, CBOR, BSON, UBJSON

A collection of useful python utilities from True North Intelligent Algorithms

A library of free open source icons for science illustrations in biology and chemistry

An Arduino Library that facilitates packet-based serial communication using COBS or SLIP encoding.

Python implementation of stewart platform

Filling form for microscopy image annotations (on the biology side of things)

Omero auto importer

End-to-end Optical Music Recognition (OMR) system. Transcribe phone-taken music sheet image into MusicXML, which can be edited and converted to MIDI.

A module with convenience functions for writing Python code that interacts with OMERO.

🎷No ceremony, just code. Blazing fast, typesafe binary serialization.