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mosdepth cov stat #454

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mosdepth cov stat #454

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bshifaw
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@bshifaw bshifaw commented May 20, 2024

Adding workflow that generates a set of coverage stats for a BAM file using Mosdepth.
Output results to a CSV file and JSON value
Output stat includes:

  1. evenness_score_coverage
  2. iqr_coverage
  3. mad_coverage
  4. mean_coverage
  5. median_coverage
  6. percent_above_4x_coverage
  7. q1_coverage
  8. q3_coverage
  9. sstdev_coverage

bshifaw added 30 commits August 17, 2023 14:05
Added evenness score to CoverageStats
… if statement to avoid evenness score if mean is 0
# Conflicts:
#	.dockstore.yml
…CoverageStats workflow, shifted to using feature branch for docker of mosdepth"
bshifaw added 30 commits August 6, 2024 13:35
… vms, this should automatically be scaled by mem"
…nterval to be processed my mosdepth per-base"
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