a docker image to be used for creating Terra cloud environment

[SHuang-Broad]

No description provided.

[jonn-smith]

This is a great idea. I had one question about including gsutil.

Another question - are there other fundamental packages that are missing? What about things like bwa-mem / bwa-mem2 / minigraph / miniasm?

[jonn-smith]

What about other common cloud utilities, such as gsutil? Does the terra base image include that?

FYI, this is how I usually install it so crcmod works and parallel uploads/downloads are fast:

# install gsutil
RUN apt-get --allow-releaseinfo-change update
RUN apt install -y curl git-lfs time datamash
RUN curl https://sdk.cloud.google.com | bash

# Setup crcmodc for gsutil:
RUN apt-get install -y gcc python3-dev python3-setuptools && \
			pip3 uninstall -y crcmod && \
			pip3 install --no-cache-dir -U crcmod

[SHuang-Broad]

yes, you're right. The base image I depend on handles the google cloud stuff.
I don't want to mess with that, other than that line which updates the google cloud cli.

[jonn-smith]

OK, sounds good. Feel free to merge.

[SHuang-Broad]

Thanks for the review, Jonn.
The base image I used is now out of date, after talking with the Terra team.
So I'll hold off on merging, and update when they release the much smaller, official base image.