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@bcgsc

BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

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  1. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 96 7

  2. LongStitch LongStitch Public

    Correct and scaffold assemblies using long reads

    Makefile 46 7

  3. ntRoot ntRoot Public

    🌳 Human ancestry inference from genomic data

    Python 4

  4. btllib btllib Public

    Bioinformatics Technology Lab common code library

    C++ 23 5

  5. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 64 9

  6. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 35 2

Repositories

Showing 10 of 116 repositories
  • ntStat Public

    ntStat: a toolkit for statistical analysis of k-mer frequency and depth

    bcgsc/ntStat’s past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Nov 1, 2024
  • goldrush Public

    Linear-time de novo Long Read Assembler

    bcgsc/goldrush’s past year of commit activity
    C++ 35 GPL-3.0 2 6 1 Updated Nov 1, 2024
  • bcgsc/pori_python’s past year of commit activity
    Python 0 GPL-3.0 1 1 1 Updated Oct 31, 2024
  • ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    bcgsc/ntEdit’s past year of commit activity
    C++ 64 GPL-3.0 9 0 0 Updated Oct 31, 2024
  • pori_ipr_client Public

    Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

    bcgsc/pori_ipr_client’s past year of commit activity
    TypeScript 8 GPL-3.0 1 0 3 Updated Oct 31, 2024
  • arcs Public

    🌈Scaffold genome sequence assemblies using linked or long read sequencing data

    bcgsc/arcs’s past year of commit activity
    C++ 91 GPL-3.0 16 1 1 Updated Oct 31, 2024
  • ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    bcgsc/ntSynt’s past year of commit activity
    Python 69 GPL-3.0 1 1 0 Updated Oct 30, 2024
  • pori_ipr_api Public

    Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

    bcgsc/pori_ipr_api’s past year of commit activity
    JavaScript 8 0 0 4 Updated Oct 30, 2024
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    bcgsc/btl’s past year of commit activity
    HTML 1 3 4 0 Updated Oct 30, 2024
  • AMPd-Up Public

    De novo antimicrobial peptide sequence generation with recurrent neural networks

    bcgsc/AMPd-Up’s past year of commit activity
    Python 1 0 0 0 Updated Oct 30, 2024

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