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Fast practical solution of sorting by reversals

Published: 01 February 2000 Publication History
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References

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V. Balsa and P.A. Pevzner, "Genome Rearrangements and Sorting by Reversals", SIAM Journal on Computing 25 (1996) 272-289.
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P. Berman and S. Hannenhalli, "Fast Sorting by Reversal", Proceedings of 7th Annual Symposium on Combinatorial Pattern Matching, Lecture Notes in Computer Science (1996), Springer Verlag.
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A. Caprara, G. Lancia and S.K. Ng, "A Column- Generation Based Branch-and-Bound Algorithm for Sorting by Reversals", in M. Farach-Colton, Fred S. Roberts, M. Vingron and M. Waterman (eds.) Mathematical Support for Molecular Biology; DIMACS Series in Discrete Mathematics and Theoretical Computer Science 47 (1999) 213-226, AMS Press.
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cover image ACM Conferences
SODA '00: Proceedings of the eleventh annual ACM-SIAM symposium on Discrete algorithms
February 2000
965 pages
ISBN:0898714532

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Society for Industrial and Applied Mathematics

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Published: 01 February 2000

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  1. alternating-cycle decomposition
  2. column generation
  3. experimental results
  4. matching
  5. sorting by reversals

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