The document below outlines efforts by the Department of Health to further help spread the curb of the coronavirus in South Africa.
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SA’s COVID-19 Epidemic: Trends & Next steps
1. SA’s Covid-19 epidemic:
Trends & Next steps
Prepared on 13th April 2020 by Salim S. Abdool Karim, FRS
Chair: Ministerial Advisory Group on Covid-19
Director: CAPRISA – Centre for the AIDS Program of Research in South Africa
CAPRISA Professor in Global Health: Columbia University
Adjunct Professor of Immunology and Infectious Diseases: Harvard University
Adjunct Professor of Medicine: Cornell University
Pro Vice-Chancellor (Research): University of KwaZulu-Natal
Director: DSI-NRF Centre of Excellence in HIV Prevention
Prepared for Minister of Health Zweli Mkhize
2. Outline
Part 1: The Coronavirus epidemic
• The Coronavirus epidemic in South Africa
• Why is South Africa not on the expected
Covid epidemic trajectory?
• How much community transmission in SA?
• Some future epidemic scenarios
Part 2: South Africa’s Covid-19 response
• Stages of the SA Covid-19 response
• Next steps: Stopping small flames to
reduce the risk of raging fires
• Conclusion
8. Outline
Part 1: The Coronavirus epidemic
• The Coronavirus epidemic in South Africa
• Why is South Africa not on the expected
Covid epidenic trajectory?
• How much community transmission in SA?
• Some future epidemic scenarios
Part 2: South Africa’s Covid-19 response
• Stages of the SA Covid-19 response
• Next steps: Stopping small flames to
reduce the risk of raging fires
• Conclusion
9. Covid-19 cases - SA vs UK
SA’s expected vs actual trajectory
Source: Tulio de Oliveira & UKZN CoV Big Data Consortium
10. SA’s epidemic trajectory is unique…
Diagram source: Tulio De’ Oliviera & KZN CoV Big Data Consortium
Why is SA different - new cases declining to a plateau:
• Are we missing cases due to low or declining testing coverage?
• Are there missing cases in poor communities due to skewed
higher private lab testing?
• Is the reduction genuine and due to the interventions in SA’s
Covid-19 response?
11. Trends in cumulative private & NHLS
Covid-19 tests show steady increase
0
200
400
600
800
1 000
1 200
1 400
2020-01-31
2020-02-06
2020-02-11
2020-02-14
2020-02-19
2020-02-25
2020-02-28
2020-03-03
2020-03-06
2020-03-09
2020-03-12
2020-03-15
2020-03-18
2020-03-21
2020-03-24
2020-03-27
2020-03-30
2020-04-02
2020-04-05
2020-04-08
Total Number of Tests Per Day
Covid-19 cases have declined in the last 2 weeks while NHLS
test numbers increased ie. while testing in people and
communities without medical aid increased
Note: Overall testing is still below the target of 10-15,000 / day
12. Outline
Part 1: The Coronavirus epidemic
• The Coronavirus epidemic in South Africa
• Why is SA not on the expected trajectory?
• How much community transmission in SA?
• Some future epidemic scenarios
Part 2: South Africa’s Covid-19 response
• Stages of the SA Covid-19 response
• Next steps: Stopping small flames to
reduce the risk of raging fires
• Conclusion
13. The 3 waves of the SA epidemic
Travelers
Contacts and nosocomial transmissions
Community transmission
Expected situation
Actual situation
14. Why did SA not follow the
expected epidemic curve?
• First & second waves did not bridge spread
effectively into the general community
• No exponential increase in cases
• If Ro > 1 daily average cases each fortnight/week would go up
• Infectiousness is ~2 weeks - fortnight average of 65 cases/day
before and 72 cases/day after lockdown suggests Ro ~1
around lockdown (Note: all cases are infections before lockdown)
• No evident national increases in acute respiratory distress
(may have some pockets)
• If community transmission is low, cases decline
• If community transmission is increasing then cases
will increase and exponential curve will start again
15. Where is the highest risk of community
transmissions in SA?
16. Outline
Part 1: The Coronavirus epidemic
• The Coronavirus epidemic in South Africa
• Why is SA not on the expected trajectory?
• How much community transmission in SA?
• Some future epidemic scenarios
Part 2: South Africa’s Covid-19 response
• Stages of the SA Covid-19 response
• Next steps: Stopping small flames to
reduce the risk of raging fires
• Conclusion
17. So what’s next?
Delayed exponential curve
Unlikely scenario Likely scenario
Wuhan
Predicted lockdown
impact in India and Wuhan
India
18. A difficult truth…
Can SA escape the worst of this epidemic?
Is exponential spread avoidable?
• No! Not unless SA has a special protective factor
(mojo) not present anywhere else in the world
• Our population will be at high risk again after the
lockdown
• Infectiousness period includes 4-7 days before symptoms
ie. people can spread it without knowing
• The virus spreads too fast normally
• Government interventions have slowed viral
spread, the curve has been impacted and we have
gained some time
19. Why the delay is important?
• Time to flatten the curve even more
• South Africa has a unique component to its
response, ie. active case finding
• Only South Africa has >28,000 community health
care workers going house-to-house in vulnerable
community for screening & testing to find cases
• New quicker and simpler diagnostics becoming
available
• New treatments become available
• Time to prepare for the medical care needs
20. Outline
Part 1: The Coronavirus epidemic
• The Coronavirus epidemic in South Africa
• Why is SA not on the expected trajectory?
• How much community transmission in SA?
• Some future epidemic scenarios
Part 2: South Africa’s Covid-19 response
• Stages of the SA Covid-19 response
• Next steps: Stopping small flames to
reduce the risk of raging fires
• Conclusion
21. Current stages of SA’s response
Stage 1: Preparation
• Community education
• Establishing lab capacity
• Surveillance
Stage 2: Primary prevention
• Social distancing & hand-washing
• Closing schools and reduced gathering
• Close the borders to international travel
Stage 3: Lockdown
• Intensifying curtailment of human interaction
Stage 4: Surveillance & active case-finding
• The Community response: door-to-door screening,
testing, isolation and contact tracing
23. What should we do this week?
Follow the lockdown rules and monitor community
transmission by average daily cases & community
positivity/screened
2
21
110
76
67
0
20
40
60
80
100
120
140
160
06 Mar - 12 Mar 13 Mar - 19 Mar 20 Mar - 26 Mar 27 Mar - 02 Apr 03 Apr - 09 Apr
AveeragenumberCOVID019casesper
week
State of Disaster Lockdown
Average daily Covid-19
cases last week = 67
(95% Confidence interval: 45-89)
Next week?
10 Apr – 16 Apr
24. Community transmission levels to
guide next steps & the lockdown
• By 18th April, will know if community transmission
interpretation accurate (~67 cases/day; CI: 45 - 89)
• Epidemiological (Ro) criterion for lockdown - if average
daily cases (- active screening) from 10 – 16 April is:
• 90+, then continue lockdown
• 45 - 89 AND CHW rate is >0.1% then continue lockdown
• 45 - 89 AND CHW rate is <0.1% then ease lockdown
• < 44, then ease lockdown
• Expect large daily variations & some increases in +ve
tests due to active case-finding (passive vs active cases)
• Abrupt return may increase spread – plan the
systematic easing of the lockdown over several days:
• Stepwise approach to reduce risk of rapid transmission taking
economic imperatives & social disruption into consideration
25. Next stages of South Africa’s response
Stage 5: Hotspots
• Surveillance to identify & intervene in hotspots
• Spatial monitoring of new cases
• Outbreak investigation & intervention teams
Stage 6: Medical Care (for the peak)
• Surveillance on case load & capacity
• Managing staff exposures and infections
• Building field hospitals for triage
• Expand ICU bed and ventilator numbers
Stage 7: Bereavement & the Aftermath
• Expanding burial capacity
• Regulations on funerals
• Managing psychological and social impact
Stage 8: Ongoing Vigilance
• Monitoring Ab levels
• Administer vaccines, if available
• Ongoing surveillance for new cases
Field hospital in
Central Park, New York
27. Outline
Part 1: The Coronavirus epidemic
• The Coronavirus epidemic in South Africa
• Why is SA not on the expected trajectory?
• How much community transmission in SA?
• Some future epidemic scenarios
Part 2: South Africa’s Covid-19 response
• Stages of the SA Covid-19 response
• Next steps: Stopping small flames to
reduce the risk of raging fires
• Conclusion
31. Stage 8: Vigilance / surveillance
• Need to stay one step ahead of viral spread and not
wait for patients to arrive in hospitals to act
• 3 components to surveillance:
• Ongoing CHW house-to-house screening and testing
especially in vulnerable communities
• One day each month – health worker surveillance
• One day each month - National surveillance day for schools,
mines, prisons & big companies
• For now self-taken swabs (later change to fingerprick) from a
small sample of people in each setting
32. Major concerns for stage 6 –
The medical care response
• Poor health care access = ↑ deaths (NY)
• Need an effective ambulance system
• HIV+ (not on ART) & TB patients may ↑ severity
• Both Covid & Flu epidemics intermingled
• Need a voluntary partial lockdown until end
September just for old people (>70 or >60) and those
with co-morbidities to reduce exposure
• Field hospitals for triage, mainly in big cities
• Getting staff ready for the exponential curve,
hospitals with makeshift ICUs, more ventilators & PPE
33. Conclusions
• SA has a unique epidemic trajectory
• Current trajectory due to curtailed community
transmission from effective early interventions
• The exponential curve is almost inevitable
• Lockdown bought SA some time (about 4 to 6 weeks)
and will likely reduce peak case load (flattened curve)
• Systematic approach to keeping infection rates low
while easing lockdown in stages
• Focus shifts to Stage 5 of hotspot identification and
intervention (fighting flames before they become fires), to
Stage 6 – preparing for peak medical care response
& Stage 8 – Vigilance & national surveillance
34. Acknowledgements
Minister Zweli Mkhize & Professor Abdool Karim thank:
• Nonhlanhla Yende-Zuma, Quarraisha Abdool Karim &
Cheryl Baxter of CAPRISA
• Tulio D’Oliviera of KRISP & KZN Big Data CoV Consortium
• Yogan Pillay & Anban Pillay of the NDoH
• Jane, Janine and Amanda of the secretariat
• NatJoints Committee members
• The Ministerial Advisory Committee for Covid-19
• The National Covid Command Council
• All the hard-working people tackling the Coronavirus
epidemic, especially health care workers on the frontline