Create and Query a Local Copy of GenBank in R
- 1.1 Setting up. Before we can download anything, we need to tell restez where we would like to store the downloaded files and the eventual GenBank database. ...
- 1.2 Download. Now we can download GenBank files using db_download() . ...
- 1.3 Create a database. ...
- 1.4 Checking the setup.
Nov 27, 2018 · Bennett et al., (2018). restez: Create and Query a Local Copy of GenBank in R. Journal of Open Source Software, 3(31), 1102, ...
Download parts of NCBI's GenBank to a local folder and create a simple SQL-like database. Use 'get' tools to query the database by accession IDs. rentrez ...
These functions download specific parts of GenBank and create the local SQL-like database. GenBank functions. These functions allow a user to query the local ...
Oct 25, 2023 · restez: Create and Query a Local Copy of 'GenBank' in R. Download large sections of 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and ...
The restez package comes with five families of functions: setup, database, get, entrez and internal/private.
Nov 27, 2018 · The restez package (D. J. Bennett, 2018a) aims to make sequence retrieval more effi- cient by allowing a user to download the GenBank database, ...
Download parts of NCBI's GenBank to a local folder and create a simple SQL-like database. Use 'get' tools to query the database by accession IDs. rentrez ...
Download large sections of 'GenBank' and generate a local SQL-based database. A user can then query this database using 'restez' functions or through ...
restez: Create and Query a Local Copy of GenBank in R · D. Bennett, Hannes Hettling, +2 authors. A. Antonelli · Published in Journal of Open Source… 27 November ...