A classical problem for genome comparison is to detect common intervals in permutations, that is, genes that are colocalized in several species, indicating that ...
Abstract— In comparative genomics, gene order data is often modelled as signed permutations. A classical problem for genome comparison is to detect common ...
Evolution under reversals: parsimony and conservation of common ...
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A classical problem for genome comparison is to detect common intervals in permutations, that is, genes that are colocalized in several species, indicating that ...
A second largely studied problem related to gene order is to compute a minimum scenario of reversals that transforms a signed permutation into another.
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Y. Diekmann, M.-F. Sagot, Eric Tannier. Evolution under Reversals: Parsimony and Conservation of Common Intervals. IEEE/ACM Transactions on Computational ...
The reversal distance and optimal sequences of reversals to transform a genome into another are useful tools to analyse evolutionary scenarios.
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et al. Evolution under reversals: parsimony and conservation of common intervals. ,. Trans. Comput. Biol. Bioinform. ,. 2007. , vol. 4. (pg. 301. -. 309. ).
Tannier, Evolution under Reversals: Parsimony and Conservation of Common Intervals, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.4 ...
This page provides an implementation of the algorithm described by in "Evolution under reversals: parsimony and conservation of common intervals", IEEE/ACM ...