Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022

Matthias König; Padraig Gleeson; Martin Golebiewski; Thomas E. Gorochowski; Michael Hucka; Sarah M. Keating; Chris J. Myers; David P. Nickerson; Björn Sommer; Dagmar Waltemath; Falk Schreiber

doi:10.1515/jib-2023-0004

Open Access Published by De Gruyter March 29, 2023

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022

Matthias König , Padraig Gleeson , Martin Golebiewski , Thomas E. Gorochowski , Michael Hucka , Sarah M. Keating , Chris J. Myers , David P. Nickerson , Björn Sommer , Dagmar Waltemath and Falk Schreiber

From the journal Journal of Integrative Bioinformatics

https://doi.org/10.1515/jib-2023-0004

Abstract

This special issue of the Journal of Integrative Bioinformatics contains updated specifications of COMBINE standards in systems and synthetic biology. The 2022 special issue presents three updates to the standards: CellML 2.0.1, SBML Level 3 Package: Spatial Processes, Version 1, Release 1, and Synthetic Biology Open Language (SBOL) Version 3.1.0. This document can also be used to identify the latest specifications for all COMBINE standards. In addition, this editorial provides a brief overview of the COMBINE 2022 meeting in Berlin.

Corresponding author: Matthias König, Institute for Biology, Institute for Theoretical Biology, Humboldt-University Berlin, Berlin, Germany, E-mail: [email protected]

Research funding: This work was funded by German Research Foundation (DFG) 436883643, (DFG) 465194077, BMBF 031L0304B and EOSC 101017536.

Published Online: 2023-03-29

This work is licensed under the Creative Commons Attribution 4.0 International License.

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Frontmatter

Special Section: Standards in Systems and Synthetic Biology; Guest Editors: Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Bjorn Sommer, Dagmar Waltemath, Falk Schreiber

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022

CellML 2.0.1

SBML level 3 package: spatial processes, version 1, release 1

Synthetic biology open language (SBOL) version 3.1.0

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