Papers by Edward A D Mitchell
European Journal of Protistology, Jun 1, 2020
Environmental Microbiology, Aug 10, 2021
SummaryProtists are abundant and play key trophic functions in soil. Documenting how their trophi... more SummaryProtists are abundant and play key trophic functions in soil. Documenting how their trophic contributions vary across large environmental gradients is essential to understand and predict how biogeochemical cycles will be impacted by global changes. Here, using amplicon sequencing of environmental DNA in open habitat soil from 161 locations spanning 2600 m of elevation in the Swiss Alps (from 400 to 3000 m), we found that, over the whole study area, soils are dominated by consumers, followed by parasites and phototrophs. In contrast, the proportion of these groups in local communities shows large variations in relation to elevation. While there is, on average, three times more consumers than parasites at low elevation (400–1000 m), this ratio increases to 12 at high elevation (2000–3000 m). This suggests that the decrease in protist host biomass and diversity toward mountains tops impact protist functional composition. Furthermore, the taxonomic composition of protists that infect animals was related to elevation while that of protists that infect plants or of protist consumers was related to soil pH. This study provides a first step to document and understand how soil protist functions vary along the elevational gradient.
Soil Biology & Biochemistry, Aug 1, 2020
Soil Biology & Biochemistry, Dec 1, 2016
Journal of Eukaryotic Microbiology, 2021
Eukaryotic microbial diversity is known to be extensive but remains largely undescribed and uncha... more Eukaryotic microbial diversity is known to be extensive but remains largely undescribed and uncharted. While much of this unknown diversity is composed of inconspicuous flagellates and parasites, larger and morphologically distinct protists are regularly discovered, most notably from poorly studied regions. Here we report a new flagship species of hyalospheniid (Amoebozoa; Arcellinida; Hyalospheniformes) testate amoeba from New Zealand and an unusual story of overlooked description under a preoccupied name and subsequent oversight for nearly one century. Through a process involving The Māori Language Commission, we named the species Apodera angatakere, meaning “a shell with a keel.” This species resembles Apodera vas but differs by the presence of a distinctive hollow keel. Cytochrome Oxidase Subunit 1 (COI) sequence data show that this species forms a distinct clade nested within genus Apodera. This conspicuous species is so far known only from New Zealand and is restricted to peatlands. It is one of the few examples of endemic microorganisms from this biodiversity hotspot and biogeographer's paradise. As over 90% of New Zealand's peatlands have been lost since European colonization and much of the remaining surfaces are threatened, Apodera angatakere could be a flagship species not only for microbial biogeography but also for island biodiversity conservation.
European Journal of Protistology, 2017
Global Ecology and Biogeography, 2016
Journal of Biogeography, 2015
AimOur aims were to compare the composition of testate amoeba (TA) communities from Santa Cruz Is... more AimOur aims were to compare the composition of testate amoeba (TA) communities from Santa Cruz Island, Galápagos Archipelago, which are likely in existence only as a result of anthropogenic habitat transformation, with similar naturally occurring communities from northern and southern continental peatlands. Additionally, we aimed at assessing the importance of niche‐based and dispersal‐based processes in determining community composition and taxonomic and functional diversity.LocationThe humid highlands of the central island of Santa Cruz, Galápagos Archipelago.MethodsWe survey the alpha, beta and gamma taxonomic and functional diversities of TA, and the changes in functional traits along a gradient of wet to dry habitats. We compare the TA community composition, abundance and frequency recorded in the insular peatlands with that recorded in continental peatlands of Northern and Southern Hemispheres. We use generalized linear models to determine how environmental conditions influenc...
Protist
This is a PDF file of an unedited manuscript that has been accepted for publication. As a service... more This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.
Special Papers, 2005
Streszczenie angielskie: Testate amoebae (or testaceans, Testacea, Arcellaceans) are unicellular ... more Streszczenie angielskie: Testate amoebae (or testaceans, Testacea, Arcellaceans) are unicellular eukaryotic organisms living in freshwater or most terrestrial habitats such as soils, mosses, lakes, rivers, as well as brackish habitats such as estuaries. They are very abundant in Sphagnum mosses, where they live in the top part of mosses and the oxygenated part of the peat. The tests (shells) of Testacea are well preserved in peat and to a lesser extent in lake sediments. Efforts should be concentrated on constructing reliable ...
Soil Biology & Biochemistry, Sep 1, 2017
Microbial Ecology, May 30, 2021
European Journal of Protistology
Global Change Biology, 2020
Assessing the degree to which climate explains the spatial distributions of different taxonomic a... more Assessing the degree to which climate explains the spatial distributions of different taxonomic and functional groups is essential for anticipating the effects of climate change on ecosystems. Most effort so far has focused on above‐ground organisms, which offer only a partial view on the response of biodiversity to environmental gradients. Here including both above‐ and below‐ground organisms, we quantified the degree of topoclimatic control on the occurrence patterns of >1,500 taxa and phylotypes along a c. 3,000 m elevation gradient, by fitting species distribution models. Higher model performances for animals and plants than for soil microbes (fungi, bacteria and protists) suggest that the direct influence of topoclimate is stronger on above‐ground species than on below‐ground microorganisms. Accordingly, direct climate change effects are predicted to be stronger for above‐ground than for below‐ground taxa, whereas factors expressing local soil microclimate and geochemistry a...
European Journal of Protistology, 2021
Quaternary Science Reviews, 2021
Abstract Testate amoebae (TA) are a common and diverse group of protists and are especially abund... more Abstract Testate amoebae (TA) are a common and diverse group of protists and are especially abundant in peatlands. The structure of peatland TA communities is well correlated to surface moisture and water table depth (WTD). For that reason, TA are widely used as proxy indicators in ecological and palaeoecological studies. Peatlands are abundant across Asia, but the diversity and ecology of the TA that inhabit these systems are poorly documented. It is therefore unclear whether TA can be used as palaeohydrological indicators in the manner in which they commonly are in Europe and North-America. There is particular uncertainty as to the efficacy of this approach in the lower latitudes. We compiled existing and new data on testate amoebae from 1124 Sphagnum-dominated samples from 42 individual peatlands covering broad latitudinal (25°–66° N) and longitudinal (68°–129° E) ranges. Using a consensus taxonomic framework, we built a checklist of TA and developed TA-based hydrological transfer functions for Asian peatlands. The results showed that three models, weighted averaging (WA), weighted average partial least squares (WA-PLS), and maximum likelihood (ML), predicted similar WTD values for full samples, while the modern analogue technique (MAT) produced the strongest (R2boot = 0.58) relationship between observed and estimated water-table depths (WTDs). Removing outlier samples improved the R2 values of observed vs. estimated WTDs, with ML then demonstrating the strongest predictive power (R2boot = 0.68, RMSEPboot = 8.98 cm). The predictive capability of the developed WTD transfer function is comparable to equivalent models for Europe and North America and thus can be used for palaeohydrological reconstructions for boreal to subtropical peatlands in Asia.
Quaternary, 2019
A 4 m core was extracted from the center of a peatland located in the Drugeon valley (France). Th... more A 4 m core was extracted from the center of a peatland located in the Drugeon valley (France). Thirteen radiocarbon dates were used to build a robust age model. Testate amoebae were used for reconstructing mire surface wetness. High-resolution pollen analysis of the sequence reconstructed 9 millennia of development of the peatland and its surrounding vegetation. During the early/middle Holocene (9500 to 5800 cal BP), warm conditions led to high evapotranspiration and low water levels. The vegetation history is characterized by the development of a Pinus and a mixed Quercus forest. From 5800 cal BP, testate amoebae show wetter conditions, indicating the onset of the cooler Neoglacial period. The cooling is also evidenced by the development of Abies and Fagus trees, replacing the oak forest. The first indicators of human impact appear at about 4800 cal BP, and indicators of farming activity remains very rare until ca. 2600 cal BP, at the beginning of the Iron Age. The development of t...
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Papers by Edward A D Mitchell