Abstract Natural perchlorate (ClO4-) exists in many places on Earth, in lunar regolith, meteorite... more Abstract Natural perchlorate (ClO4-) exists in many places on Earth, in lunar regolith, meteorites, and on the surface of Mars. Terrestrial natural ClO4- has widely variable Cl and O stable isotopic compositions (δ37Cl, δ18O, Δ17O). The δ18O and Δ17O values of ClO4- from the most hyper-arid locations co-vary. ClO4- from less arid areas has relatively little 17O excess and poor Δ17O-δ18O correlation. ClO4- from the Atacama Desert has unusually low δ37Cl (
Uptake and accumulation kinetics of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and its two maj... more Uptake and accumulation kinetics of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and its two major N-nitroso metabolites, hexahydro-1-nitroso-3,5-dinitro-1,3,5-triazine (MNX) and hexahydro-1,3,5-trinitroso-1,3,5-triazine (TNX), in earthworms was investigated. Results indicated that RDX and its N-nitroso metabolites were rapidly absorbed into earthworms (Eisenia fetida), reaching the highest concentrations within a few days. Accumulation of RDX was greater than its N-nitroso metabolites, as evidenced by a higher bioconcentration factor (BCF); BCFs were 1.86, 0.39, and 0.05 for RDX, MNX, and TNX, respectively. RDX and its N-nitroso metabolites were also rapidly eliminated from the earthworm and/or transformed to other metabolites, as evidenced by the rapid decrease of test compounds in earthworms after reaching their highest concentrations. The uptake of MNX and TNX increased as exposure concentration increased. Although these earthworms might (anaerobically) degrade RDX to MNX and MNX to TNX, it is hypothesized that this process would be slow. Other biotransformation pathways may be involved in biodegradation of RDX and its N-nitroso metabolites due to the fact that concentrations of tested compounds decreased in both soil and earthworms. It is hoped that these data can be used to refine environmental management strategies for RDX and for performing specific risk assessments of RDX and its N-nitroso metabolites.
An examination of 513 known pre-miRNAs and 237 other RNAs (tRNA, rRNA, and mRNA) revealed that mi... more An examination of 513 known pre-miRNAs and 237 other RNAs (tRNA, rRNA, and mRNA) revealed that miRNAs were significantly different from other RNAs (p < 0.001). miRNA genes were less conserved than other RNA genes, although their mature miRNA sequences were highly conserved. The A+U content of pre-miRNAs was higher than non-coding RNA (p < 0.001), but lower than mRNAs. The nucleotides in pre-miRNAs formed more hydrogen bonds and base pairs than in other RNAs. miRNAs had higher negative adjusted minimal folding free energies than other RNAs except tRNAs (p < 0.001). The MFE index (MFEI) was a sufficient criterion to distinguish miRNAs from all coding and non-coding RNAs (p < 0.001). The MFEI for miRNAs was 0.97, significantly higher than tRNAs (0.64), rRNAs (0.59), or mRNAs (0.65). Our findings should facilitate the prediction and identification of new miRNAs using computational and experimental strategies.
Anion exchange membrane (AEM), Nafion® tubing, and strong anion exchange cartridges (SAX) were ev... more Anion exchange membrane (AEM), Nafion® tubing, and strong anion exchange cartridges (SAX) were evaluated as passive sampling devices for perchlorate uptake in soybean (Glycine max). Plant uptake studies and AEM studies were conducted in three soil textures: Ottawa sand, silt loam soil, and sandy loam soil. Nafion® tubing and SAX experiments were only conducted in Ottawa sand. AEMs were sampled every hour for the first 12 h, then every 12 h until 72 h. Perchlorate concentrations in plant tissues, SAX, and water solution in Nafion® tubing were determined weekly for 4 weeks. In sand, the amount of perchlorate accumulated in AEM increased linearly with time. Perchlorate uptake by soybean plants was poorly described by linear regressions with perchlorate concentrations on membranes. The only significant relationship between soybean uptake and membrane uptake occurred for data from membranes buried 6–12 h in sand. Significant differences (p < 0.0001) were observed for the amount of perchlorate exchanged on AEM in the three soil textures. There were no differences in perchlorate concentrations in soybean leaves among the three soil textures. Regression analysis of perchlorate concentrations in water within Nafion® tubing and in sand solution indicted that there was a significant linear relationship between them (r 2 = 0.5132, p = 0.0006). Perchlorate was not detected in eluent of SAX. AEM demonstrated its potential to accumulate perchlorate. Nafion® tubing is not a good surrogate for plant uptake, but may be a promising PSD for soil solution. SAX may not be used as a PSD by itself.
Bulletin of Environmental Contamination and Toxicology, Apr 2, 2013
Despite recognition of the lack of reptile ecotoxicology data, the taxon remains poorly studied. ... more Despite recognition of the lack of reptile ecotoxicology data, the taxon remains poorly studied. Contaminant body burdens are useful in demonstrating exposures to contaminants do occur and may provide insight regarding risks. The purpose of this study was to determine organochlorine pesticide burdens in various tissues of terrestrial reptiles opportunistically collected in Arizona. Heptachlor, DDE, and endrin were the most common analytes detected in fat samples. Liver samples contained methoxychlor and heptachlor at greater frequency than other organochlorines. Investigations into chronic low-level exposures are rare for reptiles and research is needed to determine critical body residues associated with adverse impacts.
Environmental contamination by energetic compounds is an increasing international concern, althou... more Environmental contamination by energetic compounds is an increasing international concern, although little is known of their accumulation in and affect on wildlife. Reptiles are often good models for contaminants studies due to natural history traits that increase their potential for exposure. We report a study to assess accumulation and effects of octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX, High Melting Explosive) in green anoles (Anolis carolinensis). Acute oral toxicity (LD(50)) was estimated to exceed 2000 mg/kg body weight in adult male and female anoles using a standard up-and-down method. Accumulation of HMX was assessed in adult females via dietary exposure and into eggs by two routes (directly from the soil and via maternal transfer). HMX readily accumulated into adult females in a dose-dependent manner and into eggs following both exposure pathways. However, total HMX in soil-exposed eggs was up to 40-times greater than those exposed via maternal transfer. Although there was a suggestion of an HMX-induced reduction in body weight in adult females, overall there were no effects observed over the 12 week exposure period. The only significant effect on eggs was a 50% reduction in hatching success for eggs exposed to 2000 mg/kg HMX in the soil during incubation. Growth and survival of hatchlings was not affected by HMX exposure. Our results demonstrate that HMX accumulates through the food chain and into eggs from the soil, but likely poses minimal threat to lizards except to hatching success in eggs incubated in soils with HMX levels near maximum environmental concentrations.
Abstract Natural perchlorate (ClO4-) exists in many places on Earth, in lunar regolith, meteorite... more Abstract Natural perchlorate (ClO4-) exists in many places on Earth, in lunar regolith, meteorites, and on the surface of Mars. Terrestrial natural ClO4- has widely variable Cl and O stable isotopic compositions (δ37Cl, δ18O, Δ17O). The δ18O and Δ17O values of ClO4- from the most hyper-arid locations co-vary. ClO4- from less arid areas has relatively little 17O excess and poor Δ17O-δ18O correlation. ClO4- from the Atacama Desert has unusually low δ37Cl (
Uptake and accumulation kinetics of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and its two maj... more Uptake and accumulation kinetics of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and its two major N-nitroso metabolites, hexahydro-1-nitroso-3,5-dinitro-1,3,5-triazine (MNX) and hexahydro-1,3,5-trinitroso-1,3,5-triazine (TNX), in earthworms was investigated. Results indicated that RDX and its N-nitroso metabolites were rapidly absorbed into earthworms (Eisenia fetida), reaching the highest concentrations within a few days. Accumulation of RDX was greater than its N-nitroso metabolites, as evidenced by a higher bioconcentration factor (BCF); BCFs were 1.86, 0.39, and 0.05 for RDX, MNX, and TNX, respectively. RDX and its N-nitroso metabolites were also rapidly eliminated from the earthworm and/or transformed to other metabolites, as evidenced by the rapid decrease of test compounds in earthworms after reaching their highest concentrations. The uptake of MNX and TNX increased as exposure concentration increased. Although these earthworms might (anaerobically) degrade RDX to MNX and MNX to TNX, it is hypothesized that this process would be slow. Other biotransformation pathways may be involved in biodegradation of RDX and its N-nitroso metabolites due to the fact that concentrations of tested compounds decreased in both soil and earthworms. It is hoped that these data can be used to refine environmental management strategies for RDX and for performing specific risk assessments of RDX and its N-nitroso metabolites.
An examination of 513 known pre-miRNAs and 237 other RNAs (tRNA, rRNA, and mRNA) revealed that mi... more An examination of 513 known pre-miRNAs and 237 other RNAs (tRNA, rRNA, and mRNA) revealed that miRNAs were significantly different from other RNAs (p < 0.001). miRNA genes were less conserved than other RNA genes, although their mature miRNA sequences were highly conserved. The A+U content of pre-miRNAs was higher than non-coding RNA (p < 0.001), but lower than mRNAs. The nucleotides in pre-miRNAs formed more hydrogen bonds and base pairs than in other RNAs. miRNAs had higher negative adjusted minimal folding free energies than other RNAs except tRNAs (p < 0.001). The MFE index (MFEI) was a sufficient criterion to distinguish miRNAs from all coding and non-coding RNAs (p < 0.001). The MFEI for miRNAs was 0.97, significantly higher than tRNAs (0.64), rRNAs (0.59), or mRNAs (0.65). Our findings should facilitate the prediction and identification of new miRNAs using computational and experimental strategies.
Anion exchange membrane (AEM), Nafion® tubing, and strong anion exchange cartridges (SAX) were ev... more Anion exchange membrane (AEM), Nafion® tubing, and strong anion exchange cartridges (SAX) were evaluated as passive sampling devices for perchlorate uptake in soybean (Glycine max). Plant uptake studies and AEM studies were conducted in three soil textures: Ottawa sand, silt loam soil, and sandy loam soil. Nafion® tubing and SAX experiments were only conducted in Ottawa sand. AEMs were sampled every hour for the first 12 h, then every 12 h until 72 h. Perchlorate concentrations in plant tissues, SAX, and water solution in Nafion® tubing were determined weekly for 4 weeks. In sand, the amount of perchlorate accumulated in AEM increased linearly with time. Perchlorate uptake by soybean plants was poorly described by linear regressions with perchlorate concentrations on membranes. The only significant relationship between soybean uptake and membrane uptake occurred for data from membranes buried 6–12 h in sand. Significant differences (p < 0.0001) were observed for the amount of perchlorate exchanged on AEM in the three soil textures. There were no differences in perchlorate concentrations in soybean leaves among the three soil textures. Regression analysis of perchlorate concentrations in water within Nafion® tubing and in sand solution indicted that there was a significant linear relationship between them (r 2 = 0.5132, p = 0.0006). Perchlorate was not detected in eluent of SAX. AEM demonstrated its potential to accumulate perchlorate. Nafion® tubing is not a good surrogate for plant uptake, but may be a promising PSD for soil solution. SAX may not be used as a PSD by itself.
Bulletin of Environmental Contamination and Toxicology, Apr 2, 2013
Despite recognition of the lack of reptile ecotoxicology data, the taxon remains poorly studied. ... more Despite recognition of the lack of reptile ecotoxicology data, the taxon remains poorly studied. Contaminant body burdens are useful in demonstrating exposures to contaminants do occur and may provide insight regarding risks. The purpose of this study was to determine organochlorine pesticide burdens in various tissues of terrestrial reptiles opportunistically collected in Arizona. Heptachlor, DDE, and endrin were the most common analytes detected in fat samples. Liver samples contained methoxychlor and heptachlor at greater frequency than other organochlorines. Investigations into chronic low-level exposures are rare for reptiles and research is needed to determine critical body residues associated with adverse impacts.
Environmental contamination by energetic compounds is an increasing international concern, althou... more Environmental contamination by energetic compounds is an increasing international concern, although little is known of their accumulation in and affect on wildlife. Reptiles are often good models for contaminants studies due to natural history traits that increase their potential for exposure. We report a study to assess accumulation and effects of octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX, High Melting Explosive) in green anoles (Anolis carolinensis). Acute oral toxicity (LD(50)) was estimated to exceed 2000 mg/kg body weight in adult male and female anoles using a standard up-and-down method. Accumulation of HMX was assessed in adult females via dietary exposure and into eggs by two routes (directly from the soil and via maternal transfer). HMX readily accumulated into adult females in a dose-dependent manner and into eggs following both exposure pathways. However, total HMX in soil-exposed eggs was up to 40-times greater than those exposed via maternal transfer. Although there was a suggestion of an HMX-induced reduction in body weight in adult females, overall there were no effects observed over the 12 week exposure period. The only significant effect on eggs was a 50% reduction in hatching success for eggs exposed to 2000 mg/kg HMX in the soil during incubation. Growth and survival of hatchlings was not affected by HMX exposure. Our results demonstrate that HMX accumulates through the food chain and into eggs from the soil, but likely poses minimal threat to lizards except to hatching success in eggs incubated in soils with HMX levels near maximum environmental concentrations.
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