Principal manifolds and graphs in practice: from molecular biology to dynamical systems

AN Gorban, A Zinovyev - International journal of neural systems, 2010 - World Scientific
International journal of neural systems, 2010World Scientific
We present several applications of non-linear data modeling, using principal manifolds and
principal graphs constructed using the metaphor of elasticity (elastic principal graph
approach). These approaches are generalizations of the Kohonen's self-organizing maps, a
class of artificial neural networks. On several examples we show advantages of using non-
linear objects for data approximation in comparison to the linear ones. We propose four
numerical criteria for comparing linear and non-linear mappings of datasets into the spaces …
We present several applications of non-linear data modeling, using principal manifolds and principal graphs constructed using the metaphor of elasticity (elastic principal graph approach). These approaches are generalizations of the Kohonen's self-organizing maps, a class of artificial neural networks. On several examples we show advantages of using non-linear objects for data approximation in comparison to the linear ones. We propose four numerical criteria for comparing linear and non-linear mappings of datasets into the spaces of lower dimension. The examples are taken from comparative political science, from analysis of high-throughput data in molecular biology, from analysis of dynamical systems.
World Scientific