[HTML][HTML] Mechanistic concepts of iron-sulfur protein biogenesis in Biology

JJ Braymer, SA Freibert, M Rakwalska-Bange… - Biochimica et Biophysica …, 2021 - Elsevier
Abstract Iron-sulfur (Fe/S) proteins are present in virtually all living organisms and are
involved in numerous cellular processes such as respiration, photosynthesis, metabolic …

The alliance of genome resources: transforming comparative genomics

CJ Bult, PW Sternberg - Mammalian Genome, 2023 - Springer
Comparing genomic and biological characteristics across multiple species is essential to
using model systems to investigate the molecular and cellular mechanisms underlying …

A super pan-genomic landscape of rice

L Shang, X Li, H He, Q Yuan, Y Song, Z Wei, H Lin… - Cell Research, 2022 - nature.com
Pan-genomes from large natural populations can capture genetic diversity and reveal
genomic complexity. Using de novo long-read assembly, we generated a graph-based …

BRAD V3. 0: an upgraded Brassicaceae database

H Chen, T Wang, X He, X Cai, R Lin… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The Brassicaceae Database (BRAD version 3.0, BRAD V3. 0; http://brassicadb. cn)
has evolved from the former Brassica Database (BRAD V2. 0), and represents an important …

Beta-lactamase database (BLDB)–structure and function

T Naas, S Oueslati, RA Bonnin, ML Dabos… - Journal of enzyme …, 2017 - Taylor & Francis
Abstract Beta-Lactamase Database (BLDB) is a comprehensive, manually curated public
resource providing up-to-date structural and functional information focused on this …

MMseqs2 desktop and local web server app for fast, interactive sequence searches

M Mirdita, M Steinegger, J Söding - Bioinformatics, 2019 - academic.oup.com
The MMseqs2 desktop and web server app facilitates interactive sequence searches
through custom protein sequence and profile databases on personal workstations. By …

Ancient plant-like terpene biosynthesis in corals

I Burkhardt, T de Rond, PYT Chen, BS Moore - Nature chemical biology, 2022 - nature.com
Octocorals are major contributors of terpenoid chemical diversity in the ocean. Natural
products from other sessile marine animals are primarily biosynthesized by symbiotic …

[HTML][HTML] EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotes

DJ Richter, C Berney, JFH Strassert… - Peer Community …, 2022 - peercommunityjournal.org
EukProt is a database of published and publicly available predicted protein sets selected to
represent the breadth of eukaryotic diversity, currently including 993 species from all major …

Discovery and biosynthesis of cyclic plant peptides via autocatalytic cyclases

DN Chigumba, LS Mydy, F de Waal, W Li… - Nature Chemical …, 2022 - nature.com
Many bioactive plant cyclic peptides form side-chain-derived macrocycles. Lyciumins, cyclic
plant peptides with tryptophan macrocyclizations, are ribosomal peptides (RiPPs) originating …

Reconstructing the backbone of the Saccharomycotina yeast phylogeny using genome-scale data

XX Shen, X Zhou, J Kominek… - G3: Genes …, 2016 - academic.oup.com
Understanding the phylogenetic relationships among the yeasts of the subphylum
Saccharomycotina is a prerequisite for understanding the evolution of their metabolisms and …