Zhang WJ. Network Biology: Theories, Methods and Applications. Nova Science Publishers, New York, USA, 2013
Biological network analysis is a fast moving science. Many core scientific issues; for example, e... more Biological network analysis is a fast moving science. Many core scientific issues; for example, ecological structure, coevolution, coextinction and biodiversity conservation in ecology, cancer development and metabolic regulation in health science, etc., are expected to be addressed by network analysis. Network analysis is becoming the core methodology to treat complex biological systems. With the quick development of this science, more and more papers on biological networks are published. This book includes such theories and methods of network biology as methodology of social network analyses, construction of statistic networks, phylogenetic networks, multi-stable and oscillatory biological networks, creation of real networks with expected degree distribution, forest ecosystem model, etc. Chapters are contributed by 15 scientists from the USA, Canada, New Zealand, China, Sweden, and Spain, in the areas of computational science and life sciences. It will provide researchers with various aspects of the latest advances in network biology. It is a valuable reference for scientists, university teachers and graduate students in biology, health science, ecology, social science, applied mathematics and computational science.
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Volume 14, Number 3, 1 September 2024
http://www.iaees.org/publications/journals/piaees/articles/2024-14(3)/2024-14(3).asp
Cover Pages
[Front Pages (187K)] [Back Pages (78K)]
Articles
Elytron shape variability among selected synanthropic beetles from Southern Philippines
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(3): 86-94
Ernel D. Bagbag, Cesar G. Demayo, Mark Anthony J. Torres
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [PubMed]
[ Full PDF (206K)]
[Email Article] [Comment/Review Article]
Ecotourism potentials and its challenges in Dhati Walal National Park, West Ethiopia
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(3): 95-107
Alemayehu Mamo, Yohannes Shifera, Kenasa Degefa, Zelalem Telila
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [PubMed]
[ Full PDF (350K)]
[Email Article] [Comment/Review Article]
First record of Muscicapa striata Pallas 1764 (Passeriformes: Muscicapidae) from Nanda Devi Biosphere Reserve, India with evidence of a photographic plate
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(3): 108-114
Kanchan Puri, Ritesh Joshi, Raju Pushola
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [PubMed]
[ Full PDF (205K)]
[Email Article] [Comment/Review Article]
E-mail: [email protected]
Volume 13, Number 3, 1 September 2024
http://www.iaees.org/publications/journals/arthropods/articles/2024-13(3)/2024-13(3).asp
Cover Pages
[Front Pages (165K)] [Back Pages (55K)]
Articles
First record of Alpheus leptocheles Banner and Banner, 1975 (Crustacea, Alpheidae) in southeast coast of India
Arthropods, 2024, 13(3): 104-111
Mandal Kajal, Muthusamy Thangaraj
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (146K)]
[Email Article] [Comment/Review Article]
Lepidopteran insect pests of Elaeocarpus angustifolius Bl. in nursery
Arthropods, 2024, 13(3): 112-119
Pooja Singh, A. N. Singh
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (522K)]
[Email Article] [Comment/Review Article]
Biodiversity of aphidophagous predators in Ayodhya district, Uttar Pradesh, India
Arthropods, 2024, 13(3): 120-156
Krishna Manohar Tiwari, Prem Narayan Tripathi, Rajendra Singh
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (273K)]
[Email Article] [Comment/Review Article]
http://www.iaees.org/publications/journals/ces/articles/2024-14(3)/1-Zhang-Abstract.asp
E-mail: [email protected]
Volume 14, Number 3, 1 September 2024
http://www.iaees.org/publications/journals/ces/articles/2024-14(3)/2024-14(3).asp
Cover Pages
[Front Pages (81K)] [Back Pages (59K)]
Articles
Dynamically insert the forest plot into a web page: The full Javascript codes
Computational Ecology and Software, 2024, 14(3): 168-173
WenJun Zhang, GuangHua Liu
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (638K)]
[Email Article] [Comment/Review Article]
Geometric morphometric analysis describing sexual dimorphism in housefly, Musca domestica Linn. (Diptera: Muscidae)
Computational Ecology and Software, 2024, 14(3): 174-185
Ernel D. Bagbag, Helen B. Pondevida
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (383K)]
[Email Article] [Comment/Review Article]
Multi-objective mathematical programming subject to box boundary constraints on system parameters
Computational Ecology and Software, 2024, 14(3): 186-204
H. Khoder
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (926K)]
[Email Article] [Comment/Review Article]
Status and distribution of African elephant (Loxodonta africana) in Eastern Africa
Computational Ecology and Software, 2024, 14(3): 205-214
Aster Arefaine Gebrehiwet, Gebre Gidey Weldeabzgi
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (262K)]
[Email Article] [Comment/Review Article]
E-mail: [email protected]
Volume 14, Number 3, 1 September 2024
http://www.iaees.org/publications/journals/nb/articles/2024-14(3)/2024-14(3).asp
Cover Pages
[Front Pages (154K)] [Back Pages (70K)]
Articles
Stability analysis of a predator-prey model using Takagi-Sugeno method
Network Biology, 2024, 14(3): 215-227
Kaladhar Kolla, Khushbu Singh
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (2511K)]
[Email Article] [Comment/Review Article]
Dynamical behavior of an eco-epidemiological model incorporating Holling type-II functional response with prey refuge and constant prey harvesting
Network Biology, 2024, 14(3): 228-241
P. Sireeshadevi, G. Ranjith Kumar
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (1061K)]
[Email Article] [Comment/Review Article]
Analysis of amino acids network based on graph mining
Network Biology, 2024, 14(3): 242-253
Nasrin Irshad Hussain, Kuntala Boruah
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (774K)]
[Email Article] [Comment/Review Article]
E-mail: [email protected]
Volume 11, Number 3-4, 1 December 2024
http://www.iaees.org/publications/journals/selforganizology/articles/2024-11(3-4)/2024-11(3-4).asp
Cover Pages
[Front Pages (92K)] [Back Pages (77K)]
Articles
objectVisual3D: A standalone executable software for 3D visualization of objects
Selforganizology, 2024, 11(3-4): 28-53
WenJun Zhang
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (759K)][Supplementary Material (916K)]
[Email Article] [Comment/Review Article]
An interactive interior point method for mathematical multi-objective linear optimization problems based on approximate gradients
Selforganizology, 2024, 11(3-4): 54-75
M. Tlas
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (819K)]
[Email Article] [Comment/Review Article]
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/e-suppl/1-Zhang-Supplementary-Material-2.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (I) Basic statistics of medicinal attributes and functions for more than 1100 Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/basic-statistics-of-medicinal-attributes-and-functions.pdf
中草藥屬性與功效網絡藥理學: (II) 中草藥屬性與功效關系網絡及藥理機制
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/e-suppl/2-Zhang-Supplementary-Material.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (II) Relational networks and pharmacological mechanisms of medicinal attributes and functions of Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/networks-and-mechanisms-of-medicinal-attributes-and-functions.pdf
中草藥屬性與功效網絡藥理學: (III) 中草藥屬性類間典範相關函數及線性特征模型
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/e-suppl/1-Zhang-Supplementary-Material.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (III) Canonical correlation functions between attribute classes and linear eignmodels of Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/canonical-correlation-functions-between-attribute-classes.pdf
中草藥屬性與功效網絡藥理學: (IV) 中草藥功效屬性分類與網絡分析
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/e-suppl/2-Zhang-Supplementary-Material-1.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (IV) Classification and network analysis of medicinal functions of Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/classification-and-network-analysis-of-medicinal-functions.pdf
哪些科的種子植物入選中草藥的潛力更大?
https://mp.weixin.qq.com/s/D_3qpI42LMkiHgC20byQuw
Naturalness and preference for species selection of Chinese medicinal seed plants
http://www.iaees.org/publications/journals/np/articles/2019-4(1-2)/naturalness-and-preference-for-species-selection-of-Chinese-medicinal-plants.pdf
http://www.iaees.org/publications/journals/ces/articles/2024-14(2)/1-Shobairi-Abstract.asp
http://www.iaees.org/publications/journals/piaees/articles/2024-14(2)/4-Ooshaksaraie-Abstract.asp
http://www.iaees.org/publications/journals/piaees/articles/2024-14(2)/2-Bagbag-Abstract.asp
http://www.iaees.org/publications/journals/arthropods/articles/2024-13(2)/1-Thangaraj-Abstract.asp
http://www.iaees.org/publications/journals/arthropods/articles/2024-13(2)/3-Kumar-Abstract.asp
http://www.iaees.org/publications/journals/ces/articles/2024-14(2)/4-Kartal-Abstract.asp
http://www.iaees.org/publications/journals/ces/articles/2024-14(2)/2-Ramesh-Abstract.asp
http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/7-Ramesh-Abstract.asp
http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/6-Borah-Abstract.asp
http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/4-Ingale-Abstract.asp
http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/3-Katara-Abstract.asp
http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/2-Choura-Abstract.asp
Volume 14, Number 2, 1 June 2024
http://www.iaees.org/publications/journals/piaees/articles/2024-14(2)/2024-14(2).asp
Diversity, structure and regeneration status of woody species in Wacho forest, South-Western Ethiopia
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(2): 31-47
Gezahegn Gashu, Gebre Gidey, Zame Fekansa, Sime Deressa
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [PubMed]
[ Full PDF (303K)]
[Email Article] [Comment/Review Article]
Phenetic relationships among selected synanthropic beetles inferred from morphometric analysis
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(2): 48-59
Ernel D. Bagbag, Cesar G. Demayo, Mark Anthony J. Torres
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [PubMed]
[ Full PDF (1205K)]
[Email Article] [Comment/Review Article]
Ecologically-Informed approaches: International mechanisms for navigating environmental challenges and ensuring sustainability in the oil and gas exploration and production industry
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(2): 60-74
Bhupali Saikia, Saira Gori
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [PubMed]
[ Full PDF (124K)]
[Email Article] [Comment/Review Article]
Identification and comparison criteria and sub-criteria for siting urban forest parks
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(2): 75-85
Leila Ooshaksaraie
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [PubMed]
[ Full PDF (717K)]
[Email Article] [Comment/Review Article]
E-mail: [email protected]
Volume 14, Number 3, 1 September 2024
http://www.iaees.org/publications/journals/piaees/articles/2024-14(3)/2024-14(3).asp
Cover Pages
[Front Pages (187K)] [Back Pages (78K)]
Articles
Elytron shape variability among selected synanthropic beetles from Southern Philippines
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(3): 86-94
Ernel D. Bagbag, Cesar G. Demayo, Mark Anthony J. Torres
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [PubMed]
[ Full PDF (206K)]
[Email Article] [Comment/Review Article]
Ecotourism potentials and its challenges in Dhati Walal National Park, West Ethiopia
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(3): 95-107
Alemayehu Mamo, Yohannes Shifera, Kenasa Degefa, Zelalem Telila
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [PubMed]
[ Full PDF (350K)]
[Email Article] [Comment/Review Article]
First record of Muscicapa striata Pallas 1764 (Passeriformes: Muscicapidae) from Nanda Devi Biosphere Reserve, India with evidence of a photographic plate
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(3): 108-114
Kanchan Puri, Ritesh Joshi, Raju Pushola
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [PubMed]
[ Full PDF (205K)]
[Email Article] [Comment/Review Article]
E-mail: [email protected]
Volume 13, Number 3, 1 September 2024
http://www.iaees.org/publications/journals/arthropods/articles/2024-13(3)/2024-13(3).asp
Cover Pages
[Front Pages (165K)] [Back Pages (55K)]
Articles
First record of Alpheus leptocheles Banner and Banner, 1975 (Crustacea, Alpheidae) in southeast coast of India
Arthropods, 2024, 13(3): 104-111
Mandal Kajal, Muthusamy Thangaraj
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (146K)]
[Email Article] [Comment/Review Article]
Lepidopteran insect pests of Elaeocarpus angustifolius Bl. in nursery
Arthropods, 2024, 13(3): 112-119
Pooja Singh, A. N. Singh
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (522K)]
[Email Article] [Comment/Review Article]
Biodiversity of aphidophagous predators in Ayodhya district, Uttar Pradesh, India
Arthropods, 2024, 13(3): 120-156
Krishna Manohar Tiwari, Prem Narayan Tripathi, Rajendra Singh
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (273K)]
[Email Article] [Comment/Review Article]
http://www.iaees.org/publications/journals/ces/articles/2024-14(3)/1-Zhang-Abstract.asp
E-mail: [email protected]
Volume 14, Number 3, 1 September 2024
http://www.iaees.org/publications/journals/ces/articles/2024-14(3)/2024-14(3).asp
Cover Pages
[Front Pages (81K)] [Back Pages (59K)]
Articles
Dynamically insert the forest plot into a web page: The full Javascript codes
Computational Ecology and Software, 2024, 14(3): 168-173
WenJun Zhang, GuangHua Liu
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (638K)]
[Email Article] [Comment/Review Article]
Geometric morphometric analysis describing sexual dimorphism in housefly, Musca domestica Linn. (Diptera: Muscidae)
Computational Ecology and Software, 2024, 14(3): 174-185
Ernel D. Bagbag, Helen B. Pondevida
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (383K)]
[Email Article] [Comment/Review Article]
Multi-objective mathematical programming subject to box boundary constraints on system parameters
Computational Ecology and Software, 2024, 14(3): 186-204
H. Khoder
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (926K)]
[Email Article] [Comment/Review Article]
Status and distribution of African elephant (Loxodonta africana) in Eastern Africa
Computational Ecology and Software, 2024, 14(3): 205-214
Aster Arefaine Gebrehiwet, Gebre Gidey Weldeabzgi
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (262K)]
[Email Article] [Comment/Review Article]
E-mail: [email protected]
Volume 14, Number 3, 1 September 2024
http://www.iaees.org/publications/journals/nb/articles/2024-14(3)/2024-14(3).asp
Cover Pages
[Front Pages (154K)] [Back Pages (70K)]
Articles
Stability analysis of a predator-prey model using Takagi-Sugeno method
Network Biology, 2024, 14(3): 215-227
Kaladhar Kolla, Khushbu Singh
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (2511K)]
[Email Article] [Comment/Review Article]
Dynamical behavior of an eco-epidemiological model incorporating Holling type-II functional response with prey refuge and constant prey harvesting
Network Biology, 2024, 14(3): 228-241
P. Sireeshadevi, G. Ranjith Kumar
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (1061K)]
[Email Article] [Comment/Review Article]
Analysis of amino acids network based on graph mining
Network Biology, 2024, 14(3): 242-253
Nasrin Irshad Hussain, Kuntala Boruah
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ] [PubMed]
[ Full PDF (774K)]
[Email Article] [Comment/Review Article]
E-mail: [email protected]
Volume 11, Number 3-4, 1 December 2024
http://www.iaees.org/publications/journals/selforganizology/articles/2024-11(3-4)/2024-11(3-4).asp
Cover Pages
[Front Pages (92K)] [Back Pages (77K)]
Articles
objectVisual3D: A standalone executable software for 3D visualization of objects
Selforganizology, 2024, 11(3-4): 28-53
WenJun Zhang
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (759K)][Supplementary Material (916K)]
[Email Article] [Comment/Review Article]
An interactive interior point method for mathematical multi-objective linear optimization problems based on approximate gradients
Selforganizology, 2024, 11(3-4): 54-75
M. Tlas
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [DOAJ]
[ Full PDF (819K)]
[Email Article] [Comment/Review Article]
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/e-suppl/1-Zhang-Supplementary-Material-2.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (I) Basic statistics of medicinal attributes and functions for more than 1100 Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/basic-statistics-of-medicinal-attributes-and-functions.pdf
中草藥屬性與功效網絡藥理學: (II) 中草藥屬性與功效關系網絡及藥理機制
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/e-suppl/2-Zhang-Supplementary-Material.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (II) Relational networks and pharmacological mechanisms of medicinal attributes and functions of Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/networks-and-mechanisms-of-medicinal-attributes-and-functions.pdf
中草藥屬性與功效網絡藥理學: (III) 中草藥屬性類間典範相關函數及線性特征模型
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/e-suppl/1-Zhang-Supplementary-Material.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (III) Canonical correlation functions between attribute classes and linear eignmodels of Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/canonical-correlation-functions-between-attribute-classes.pdf
中草藥屬性與功效網絡藥理學: (IV) 中草藥功效屬性分類與網絡分析
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/e-suppl/2-Zhang-Supplementary-Material-1.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (IV) Classification and network analysis of medicinal functions of Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/classification-and-network-analysis-of-medicinal-functions.pdf
哪些科的種子植物入選中草藥的潛力更大?
https://mp.weixin.qq.com/s/D_3qpI42LMkiHgC20byQuw
Naturalness and preference for species selection of Chinese medicinal seed plants
http://www.iaees.org/publications/journals/np/articles/2019-4(1-2)/naturalness-and-preference-for-species-selection-of-Chinese-medicinal-plants.pdf
http://www.iaees.org/publications/journals/ces/articles/2024-14(2)/1-Shobairi-Abstract.asp
http://www.iaees.org/publications/journals/piaees/articles/2024-14(2)/4-Ooshaksaraie-Abstract.asp
http://www.iaees.org/publications/journals/piaees/articles/2024-14(2)/2-Bagbag-Abstract.asp
http://www.iaees.org/publications/journals/arthropods/articles/2024-13(2)/1-Thangaraj-Abstract.asp
http://www.iaees.org/publications/journals/arthropods/articles/2024-13(2)/3-Kumar-Abstract.asp
http://www.iaees.org/publications/journals/ces/articles/2024-14(2)/4-Kartal-Abstract.asp
http://www.iaees.org/publications/journals/ces/articles/2024-14(2)/2-Ramesh-Abstract.asp
http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/7-Ramesh-Abstract.asp
http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/6-Borah-Abstract.asp
http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/4-Ingale-Abstract.asp
http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/3-Katara-Abstract.asp
http://www.iaees.org/publications/journals/nb/articles/2024-14(2)/2-Choura-Abstract.asp
Volume 14, Number 2, 1 June 2024
http://www.iaees.org/publications/journals/piaees/articles/2024-14(2)/2024-14(2).asp
Diversity, structure and regeneration status of woody species in Wacho forest, South-Western Ethiopia
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(2): 31-47
Gezahegn Gashu, Gebre Gidey, Zame Fekansa, Sime Deressa
[Abstract] [XML] [EndNote] [RefManager] [BibTex] [PubMed]
[ Full PDF (303K)]
[Email Article] [Comment/Review Article]
Phenetic relationships among selected synanthropic beetles inferred from morphometric analysis
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(2): 48-59
Ernel D. Bagbag, Cesar G. Demayo, Mark Anthony J. Torres
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Ecologically-Informed approaches: International mechanisms for navigating environmental challenges and ensuring sustainability in the oil and gas exploration and production industry
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(2): 60-74
Bhupali Saikia, Saira Gori
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Identification and comparison criteria and sub-criteria for siting urban forest parks
Proceedings of the International Academy of Ecology and Environmental Sciences, 2024, 14(2): 75-85
Leila Ooshaksaraie
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y(t1)=(1-c)f(x(t1)),
z(t1)=c+y(t1),i=1;
y(ti)=(1-c-z(ti-1)exp(-r(t-ti-1))) f(x(ti)),
z(ti)=c+z(ti-1)exp(-r(t-ti-1))+y(ti),tit<ti+1, i=2, 3, …
where y(ti): the rate of newly increased mutant individuals after the ith insecticide use, z(ti): the total mutation rate after the ith insecticide use, ti: the time of the ith insecticide use, and y(ti) the theoretical mutation rate of the ith insecticide use. The relationship between the pest population resistance R(ti) and z(ti) is represented as: R(ti)=p+q/(1-z(ti)).
Thus the variables as insecticide use dosage, timing and frequency of insecticide uses, genetic mutagenicity of insect individuals, insecticide-resistant individuals’ fitness, etc., were included in the model. Sensitivity analysis indicated that the lower the fitness (r) of the insecticide-resistant individuals is, the slower the increase of insecticide resistance will be. The greater the insect individuals’ mutagenicity (b) is, the more quickly the insecticide resistance will rise. The greater the insecticide use dosage (x(t)) is, the more quickly the insecticide resistance will increase. The higher the frequency of insecticide uses is, the greater the insecticide resistance will increase. The results showed that the insecticide dosage is more important than usage frequency in determining the development of insecticide resistance, which highlights the importance of joint use of reducing insecticide dosage and adopting IPM technologies. The model can be used to not only the dynamic simuation of development of insecticide resistance but also the assessment of IPM technologies in reducing insecticide resistance. For example, with a set of specific parametrical values, the simulation of the model demonstated that insecticide resistance will reduce 83.74% when the insecticide dosage is reduced from 180 to 20 by jointly using IPM technologies. Full codes of Matlab, R and BASIC programs for the model were given.
From this integrated and self-contained book, researchers, university teachers and students will be provided with an in-depth and complete insight on knowledge, methodology and recent advances of graphs, networks and agent-based-modeling in ecology and environmental sciences.
Java codes and a standalone software package will be presented in the book for easy use for those not familiar with mathematical details.
Contents:
Graphs:
Definitions and Concepts
Fundamentals of Topology
Matrix Representations and Computer Storage of Graphs
Trees and Planar Graphs
Algorithms of Graphs
Directed Graphs
Networks:
Networks
Complex Networks and Network Analysis
Ecological Network Analysis: Research Advances
Ecological Network Analysis: Innovations
Agent-based Modeling:
Agent-based Modeling
Cell Automata Modeling of Pest Percolation
ABM frame for Biological Community Succession and Assembly
Agent-based Modeling of Ecological Problems
Readership: Research scientists, university teachers, graduate students and high-level undergraduates in the areas of ecology, environmental sciences, computational science and applied mathematics.
Computational Ecology consists of two parts: the first describes the methods and algorithms of ANNs, interpretability and mathematical generalization of neural networks, Matlab neural network toolkit, etc., while the second provides case studies of applications of ANNs in ecology, Matlab codes, and comparisons of ANNs with conventional methods. This publication will be a valuable reference for research scientists, university teachers, graduate students and high-level undergraduates in the areas of ecology, environmental sciences, and computational science.
Contents:
Artificial Neural Networks: Principles, Theories and Algorithms:
Feedforward Neural Networks
Linear Neural Networks
Radial Basis Function Neural Networks
BP Neural Network
Self-Organizing Neural Networks
Feedback Neural Networks
Design and Customization of Artificial Neural Networks
Learning Theory, Architecture Choice and Interpretability of Neural Networks
Mathematical Foundations of Artificial Neural Networks
Matlab Neural Network Toolkit
Applications of Artificial Neural Networks in Ecology:
Dynamic Modeling of Survivor Process
Simulation of Plant Growth Process
Simulation of Food Intake Dynamics
Species Richness Estimation and Sampling Data Documentation
Modeling Arthropod Abundance from Plant Composition of Grassland Community
Pattern Recognition and Classification of Ecosystems and Functional Groups
Modeling Spatial Distribution of Arthropods
Risk Assessment of Species Invasion and Establishment
Prediction of Surface Ozone
Modeling Dispersion and Distribution of Oxide and Nitrate Pollutants
Modeling Terrestrial Biomass
Readership: Research scientists, university teachers, graduate students and high-level undergraduates in the area of ecology, environmental sciences and computational science.
Readers will have an in-depth and comprehensive understanding of selforganizology, with detailed background information provided for those who wish to delve deeper into the subject and explore research literature.
This book is a valuable reference for research scientists, university teachers, graduate students and high-level undergraduates in the areas of computational science, artificial intelligence, applied mathematics, engineering science, social science and life sciences.
Contents:
Organization and Organizational Theory
Selforganizology: The Science of Self-organization
Agent-based Modeling
Intelligence Principles
Catastrophe Theory and Methods
Self-adaptation and Control Systems
Cellular Automata and Spatial Diffusion Models
Artificial Neural Networks
Ant Colony Optimization
Fish and Particle Swarm Optimization
Synergy, Coevolution, and Evolutionary Algorithms
Synergy: Correlation Analysis
Community Succession and Assembly
Mathematical Foundations
Readership: Research scientists, university teachers, graduate students and high-level undergraduates in the areas of computational science, artificial intelligence, applied mathematics, engineering science, social science and life sciences.
Across 12 parts and 26 chapters, with Matlab codes provided for most models and algorithms, this self-contained title provides an in-depth and complete insight on network biology. It is a valuable read for high-level undergraduates and postgraduates in the areas of biology, ecology, environmental sciences, medical science, computational science, applied mathematics, and social science.
Contents:
Mathematical Fundamentals:
Fundamentals of Graph Theory
Graph Algorithms
Fundamentals of Network Theory
Other Fundamentals
Crucial Nodes/Subnetworks/Modules, Network Types, and Structural Comparison:
Identification of Crucial Nodes and Subnetworks/Modules
Detection of Network Types
Comparison of Network Structure
Network Dynamics, Evolution, Simulation and Control:
Network Dynamics
Network Robustness and Sensitivity Analysis
Network Control
Network Evolution
Cellular Automata
Self-Organization
Agent-based Modeling
Flow Analysis:
Flow/Flux Analysis
Link and Node Prediction:
Link Prediction: Sampling-based Methods
Link Prediction: Structure- and Perturbation-based Methods
Link Prediction: Node-Similarity-based Methods
Node Prediction
Network Construction:
Construction of Biological Networks
Pharmacological and Toxicological Networks:
Network Pharmacology and Toxicology
Ecological Networks:
Food Webs
Microscopic Networks:
Molecular and Cellular Networks
Social Networks:
Social Network Analysis
Software:
Software for Network Analysis
Big Data Analytics:
Big Data Analytics for Network Biology
Readership: Advanced undergraduates and graduate students and researchers in biology, ecology, pharmacology, applied mathematics, computational science, etc.
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/e-suppl/1-Zhang-Supplementary-Material-2.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (I) Basic statistics of medicinal attributes and functions for more than 1100 Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/basic-statistics-of-medicinal-attributes-and-functions.pdf
中草藥屬性與功效網絡藥理學: (II) 中草藥屬性與功效關系網絡及藥理機制
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/e-suppl/2-Zhang-Supplementary-Material.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (II) Relational networks and pharmacological mechanisms of medicinal attributes and functions of Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(2)/networks-and-mechanisms-of-medicinal-attributes-and-functions.pdf
中草藥屬性與功效網絡藥理學: (III) 中草藥屬性類間典範相關函數及線性特征模型
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/e-suppl/1-Zhang-Supplementary-Material.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (III) Canonical correlation functions between attribute classes and linear eignmodels of Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/canonical-correlation-functions-between-attribute-classes.pdf
中草藥屬性與功效網絡藥理學: (IV) 中草藥功效屬性分類與網絡分析
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/e-suppl/2-Zhang-Supplementary-Material-1.pdf
Network pharmacology of medicinal attributes and functions of Chinese herbal medicines: (IV) Classification and network analysis of medicinal functions of Chinese herbal medicines
http://www.iaees.org/publications/journals/np/articles/2017-2(3)/classification-and-network-analysis-of-medicinal-functions.pdf
哪些科的種子植物入選中草藥的潛力更大?
https://mp.weixin.qq.com/s/D_3qpI42LMkiHgC20byQuw
Naturalness and preference for species selection of Chinese medicinal seed plants
http://www.iaees.org/publications/journals/np/articles/2019-4(1-2)/naturalness-and-preference-for-species-selection-of-Chinese-medicinal-plants.pdf
This is the first comprehensive, methodological and self-contained tutorial on Network Biology, mainly based on the book, Fundamentals of Network Biology (Zhang WJ. World Scientific Europe, London, 2018), etc.
The tutorial will be added continuously with new chapters and sections in the future. Users are suggested to often check and download the latest tutorial of more content. The tutorial was edited on Windows Server 2008 platform and may exhibit different appearance on other platforms. So users can adjust the presentation contents to yield a better appearance.
Users are encouraged to sponsor Network Biology undergraduate or postgraduate courses based on this tutorial, and welcome to contact the author, WenJun Zhang ([email protected]), for further affairs, or for providing suggestions.
The tutorial is an open access one and is subject to continuous updation and improvement from users. It is defined as the 1st edition of the Tutorial of Network Biology. Users are encouraged to improve, distribute and disseminate the tutorial anywhere.
This tutorial is available also at:
https://doi.org/10.13140/RG.2.2.17798.22082
or
https://www.researchgate.net/publication/332436558_Tutorial_of_Network_Biology?channel=doi&linkId=5cb5265b299bf12097683af3&showFulltext=true
https://www.researchgate.net/publication/331987716_wangluoshengwuxue-yinyan
The English tutorial is available at:
https://doi.org/10.13140/RG.2.2.17798.22082