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Jul 10, 2018 · The circle indicates which molecule (ligand or protein) is the acceptor. The color indicates whether the connection is with the backbone (orange) ...
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In this paper we present a system for compact 2D visualization of molecular simulations. It purposely omits most spatial information and presents physical ...
InVADo, a comprehensive interactive visual analysis tool for large docking data. It consists of multiple linked 2D and 3D views.
Feb 20, 2024 · Welcome to Bioinformatics Insights. In this video, we will learn, How to analyze all types of protein-ligand interactions.
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Dec 5, 2024 · When studying protein‐ligand interactions, many different factors can influence the behaviour of the protein as well as the ligands.
The analysis of protein-ligand interactions is complex because of the many factors at play. Most current methods for visual analysis provide this information in ...
An easy to use, fast and customizable software for quantification and visualization of molecular interactions based on the calculation of surface areas in ...
Jan 10, 2019 · A web server that combines large-scale analysis of conserved interactions in protein-ligand complexes at the atomic-level, interactive visual representations,
May 16, 2022 · We reported the features of receptor-ligand interaction patterns and the differences between agonist and inverse agonist binding.
... PLIP is able to detect different types of interactions between protein-ligand complexes, such as halogen bonds, metal complexes, water bridges, salt bridges ...