May 21, 2018 · SAMSA2 is a rapid and efficient metatranscriptome pipeline for analyzing large RNA-seq datasets in a supercomputing cluster environment. SAMSA2 ...
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May 21, 2018 · SAMSA2 is a rapid and efficient metatranscriptome pipeline for analyzing large RNA-seq datasets in a supercomputing cluster environment.
transcript/samsa2: SAMSA pipeline, version 2.0. An open ... - GitHub
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An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customizable reference databases.
Sep 29, 2017 · Results. Here we present SAMSA2, an upgrade to the original Simple Annotation of Metatranscriptomes by Sequence Analysis (SAMSA) pipeline ...
SAMSA is one of the first bioinformatics pipelines designed with metatranscriptome data specifically in mind. It accepts raw sequence data in FASTQ form as its ...
The SAMSA2 analysis pipeline. Starting sequence reads are merged, cleaned, and filtered to remove ribosomal RNA (rRNA) sequences. At the annotation step, ...
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Metatranscriptomics allows one to investigate the gene activity in an environmental sample via high-throughput sequencing.
May 21, 2018 · It is now possible to determine all microbial genes expressed in a sample (the metatranscriptome) using sequencing technologies and software to ...
SAMSA2: A standalone metatranscriptome analysis pipeline. https://doi.org/10.1101/195826 · Full text. Journal: 2017. Publisher: Cold Spring Harbor Laboratory.
May 4, 2018 · SAMSA2 is available with detailed documentation, and example input and output files along with examples of master scripts for full pipeline ...