Oct 22, 2024 · PDF | A new implementation of a force decomposition method for parallel molecular dynamics simulations is presented.
A new implementation of a force decomposition method for parallel molecular dynamics simulations is presented. It is based on a geometrical decomposition of the ...
Simulate the motions of collections of atoms. Forces due to bonds and non-bonded (Coulomb and. Lennard-Jones) interactions.
Systems using force- decomposition have been found to easily scale with the number of processors in computation and communication. Plimpton 22, 23 and Taylor et ...
So we need a dynamic load balancing algorithm where the volume of each domain decomposition cell can be adjusted independently. To achieve this, the 2- or 3-D ...
A Load Balanced Force-Domain Decomposition Algorithm for Parallel Molecular Dynamics Simulations · G. Sutmann, F. Janoschek · Published 2007 · Chemistry, Computer ...
load balance indexes of the irregular force decomposition and atom decomposition algorithms on 512 processors were 1.15 and 1.48, respectively. Data ...
The proposed scheduling algorithm builds and continually updates a model of the distributed system, which it then uses to make decisions about how to optimally ...
Missing: Communication | Show results with:Communication
Mar 1, 2008 · We examine parallel algorithms for molecular dynamics simulations involving long-range induction interactions. The algorithms are tested by ...
We present the design and implementation of the Force Decomposition Machine (FDM), a cluster of personal computers (PCs) that is tailored to running molecular ...