May 10, 2023 · In this paper we show that using prefix-free parsing -- which takes parameters that let us tune the average length of the phrases -- instead of ...
Aug 29, 2023 · We implement our method and demonstrate it is between 3 and 18 times faster than competing methods on queries to GRCh38. And was consistently ...
In this paper we show that using prefix-free parsing – which takes parameters that let us tune the average length of the phrases – instead of induced suffix ...
In this paper we show that using prefix-free parsing -- which takes parameters that let us tune the average length of the phrases -- instead of induced suffix ...
Sep 13, 2024 · In this paper we show that using prefix-free parsing -- which takes parameters that let us tune the average length of the phrases -- instead of ...
Acceleration of FM-Index Queries Through Prefix-Free Parsing. A. Hong, M. Oliva, D. Köppl, H. Bannai, C. Boucher, and T. Gagie. WABI, volume 273 of LIPIcs, ...
In this paper we show that using prefix-free parsing—which takes parameters that let us tune the average length of the phrases—instead of induced suffix sorting ...
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What is FM indexing?
Co-authors ; Acceleration of FM-Index Queries Through Prefix-Free Parsing. A Hong, M Oliva, D Köppl, H Bannai, C Boucher, T Gagie. arXiv preprint arXiv: ...
In particular, we show that with prefix-free parsing we can build an 131-MB run-length compressed FM-index (restricted to support only counting and not locating) ...
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This paper introduces a preprocessing algorithm, referred to as prefix-free parsing, that takes a text T as input, and in one-pass generates a dictionary D ...