Jun 21, 2023 · This paper identifies major challenges in developing efficient GPU code on all major stages of the BWA-MEM program, including seeding, seed ...

Aug 15, 2023 · This paper identifies major challenges in developing efficient GPU code on all major stages of the BWA-MEM program, including seeding, seed chaining, Smith- ...

Jun 21, 2023 · This paper identifies major challenges in developing efficient GPU code on all major stages of the BWA-MEM program, including seeding, seed ...

This paper identifies major challenges in developing efficient GPU code on all major stages of the BWA-MEM program, including seeding, seed chaining, ...

Jun 28, 2023 · BWA-MEM is a fast, accurate algorithm for mapping DNA sequence reads ... Use GPUs to accelerate sorting and marking. (default: None). --low ...

This paper identifies major challenges in developing efficient GPU code on all major stages of the BWA-MEM program, including seeding, seed chaining, Smith- ...

This article describes a hardware accelerated implementation of the BWA-MEM genomic mapping algorithm, one of the most widely used read mapping tools.

Jan 9, 2024 · fq2bamfast uses an accelerated version of BWA-MEM to generate BAM/CRAM output given one or more pairs of FASTQ files.

Nov 20, 2024 · Sequence alignment is a popular approach that localizes read fragments based on their similarity to a corresponding reference genome of the ...

In this paper, we propose BWA-MEM-SCALE which offers software-based acceleration techniques that fully utilize system resources to speed up genome sequence ...