Fix pyarrow import in CI pipelines #11
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ehsantn
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Dec 4, 2024
scott-routledge2
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Dec 16, 2024
* Initial commit * [BP-454] IPyParallel Wrapper Kernel for Platform (#1) * [BP-454] Improvements and fixes (#2) * Fix README * Add PyPi badge * Allow users to create their own IPy clusters, formatting * Fix typo * Simplify a little * Invert magic check logic * Small change in example ipcluster config * Generate IPYPARALLEL_MAGICS from line and cell magics * Fix typo in comment * Modify `example_ipcluster_config.py` (#3) * [BP-1032] Check `update_hostfile.sh` in multiple locations including `/home/bodo` (#4) * Check update_hostfile in multiple locations including /home/bodo * Add .DS_Store to .gitignore * [BP-902] feat/custom-launcher (#5) * feat/custom-launcher * rfac: rename launcher * rfac: default error message when exit code doesnt match * chore: register launcher entrypoint * chore: handle px autopx errors * Update launcher.py * Update launcher.py * chore: update logging * chore: minor fixes * chore: minor fixes * rfac: check for engine running status * Update launcher.py * fix: include bodo custom magics * Update bodo_platform_ipyparallel_kernel/kernel.py Co-authored-by: Sahil Gupta <[email protected]> * chore: minor fixes * chore: minor fixes * fix: formatting * chore: minor fixes * chore: allow users to run pxresult or disable autopx when engines not running Co-authored-by: Sahil Gupta <[email protected]> * Fix issue with autopx saying it's enabled after cluster creation failed (#7) * Return when cluster isn't created succesfully * Fix issue with cell remaining in pending state after cluster creation fails Co-authored-by: Isaac <[email protected]> * BP-1607: Shutdown view on error (#8) * Shutdown view * Add comment Co-authored-by: Isaac <[email protected]> * BP 1607: IPyParallel Engines not killed (#9) * Shutdown view * Add comment * Add extra shutdown to stop_ipyparallel_cluster * Kill engines after shutdown * Add async * Change order of shutdown * Stop engines * Add debug messages * Switch to sigterm * Remove async * Remove check * If there are outstanding tasks abort and kill engines * Add await * Use client instead of cluster * Fix member name * Try sync * Remove unecessary shutdown * Readd * Move if * Run formatter * Try forcekilling after stop_cluster * Revert * Add comment * Stop engines and controller through cluster interface * Add comments and manually remove cluster file * Formatting * Readd shutdown * Replace stop_cluster_sync with shutdown * Change to cluster api * Add debug * Add block=True * Add wrap future * Wait with timneout * Wrap in wait * Always SigKill * Add stop_cluster_sync at end of shutdown * Add catch for filenotfound * Add comments Co-authored-by: Isaac <[email protected]> Co-authored-by: Sahil <[email protected]> * [BP-1486][BP-1826] Add support for SQL language mode using the `%%sql` magic (#6) This adds support for the new SQL language mode on our platform. This is done by converting SQL queries to a %%sql magic execution. The language mode and catalog detection is done in execute_request where this information is readily available. This function is run before do_execute, which is why we get the required information from the execution metadata here, and convert the code that's then sent to do_execute. Since we want to run SQL queries on the IPyParallel cluster by default, we also add the %%px magic automatically (if %autopx isn't enabled). Just like any other IPP magics, this would therefore start an IPP cluster if one is not already initialized. Co-authored-by: Isaac <[email protected]> Co-authored-by: meehawk <[email protected]> Co-authored-by: Sahil <[email protected]> * [BP-2119] Replace MPI EngineSetLauncher with Slurm (#11) * replace MPI EngineSetLauncher with Slurm * check if Slurm installed * workaround ipp signal bug * add comment * Remove dead ipcluster config file * [BP-880] Add Parallel-Python Mode Support (#10) This adds support for a "Parallel-Python" language mode, in addition to the existing "Python" and "SQL" language modes. This has the following implications: - `%autopx` is no longer required, and in fact will be ignored by the kernel. - Functionality of the "Python" mode has been limited to running things on a single core (note that it's not rank 0 of the IPyParallel cluster, rather a separate process). This mode is now limited to running sequential code (for debugging, etc.) and our custom line magics like `%pconda`, etc. IPyParallel magics are not supported, and the kernel will show an error message if they're used. - "Parallel-Python" is really the new default. It will add `%%px` to all code (unless the user is already using an IPyParallel magic). - `execute_request` acts like a pre-parser for all code based on the language mode, reducing the complexity in `do_execute`. - `execute_request` does the following: - For SQL mode: - If IPyParallel, SQL or Bodo Platform magics (`%pconda`, etc.) are used, an error will be shown and no code will be run. - If the code is regular SQL (which we assume it is if it doesn't use the magics mentioned above), we will add the `%%sql` magic along with the catalog details to the code. If a catalog is not specified, an error message will be shown to the users. We will also add `%%px` so it's executed on the IPyParallel cluster. - If the code turns out not to be SQL, the behavior is undefined (most likely a BodoSQL parsing error, but could be something else). - For Python mode: - If any of the IPyParallel magics are used, an error will be shown to the user to use the Parallel-Python mode instead. - Everything else will be passed along as is, including our custom line magics (`%pconda`, etc.) - For Parallel Python mode: - If `%autopx` is used, a warning will be shown to the user and the code will be disregarded. - Any other IPyParallel magics will be passed through as is (this is safe since `autopx` won't be on, and the semantics should always be correct while in Parallel-Python mode). - Our custom magics (`%pconda`, etc.) will be passed through as is (this is safe since `autopx` cannot be on, so they will get run on the separate single core process, which is the intended use case). - All other code will be prepended with `%%px`. - `do_execute` is now simpler, in that it just starts an IPyParallel cluster whenever the code has any IPyParallel magics (`autopx` can't get through `execute_request`, but even if it did, `do_execute` will detect it and show a warning). It also handles not allowing running IPyParallel magics (except `%pxresult`) when the engines are dead (same as before). Co-authored-by: Isaac <[email protected]> * revert to using MPIEngineLauncher (#12) * revert to using MPI * switching to using environment vars * switching to using environment vars * Update bodo_platform_ipyparallel_kernel/launcher.py Co-authored-by: Sahil Gupta <[email protected]> Co-authored-by: Aaditya Srivathsan <[email protected]> Co-authored-by: Sahil Gupta <[email protected]> * changes * update conda-lock * change location * fix test * suggested changes * fix * update buildspec * [run ci] --------- Co-authored-by: Sahil Gupta <[email protected]> Co-authored-by: Sahil Gupta <[email protected]> Co-authored-by: meehawk <[email protected]> Co-authored-by: Isaac Warren <[email protected]> Co-authored-by: Isaac <[email protected]> Co-authored-by: meehawk <[email protected]> Co-authored-by: Ehsan Totoni <[email protected]> Co-authored-by: Aaditya Srivathsan <[email protected]> Co-authored-by: Aaditya Srivathsan <[email protected]>
scott-routledge2
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Co-authored-by: = <=>
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Changes included in this PR
Fixes issue where a newer version of libutf8proc gets installed which breaks our pyarrow package
Testing strategy
Ran Nightly, PR CI to confirm that building bodo succeeded
User facing changes
Checklist
[run CI]in your commit message.