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The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families

Figure 6

Maximum Likelihood Phylogeny for the IDO Family

The phylogeny is based on an alignment of 93 sequences from GOS-100 and 51 sequences from public-100 and NCBI-nr from March 2006 that matched the IDO Pfam model and satisfied multiple alignment quality criteria. The IDO family is eukaryotic specific in public-100. The phylogeny shows a clade with all the GOS sequences, predicted to be bacterial (navy blue), eukaryotic (yellow), or unknown (gray), along with two sequences from the marine bacteria Erythrobacter litoralis and Nitrosococcus oceani (lime green) submitted to the sequence database after February 2005, and a public-only clade of only eukaryotic sequences (orange).

Figure 6

doi: https://doi.org/10.1371/journal.pbio.0050016.g006