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Determining influential miRNA targets in diseases using influence diffusion model

Published: 09 September 2015 Publication History

Abstract

miRNAs (non-coding RNAs of ~20--22 nt size) exhibit a self-regulatory mechanism through which they act as positive/negative regulators of expression of genes and other miRNAs. This has direct implications in the regulation of various signaling pathways and types of cancers. We use information diffusion theory to quantify influence diffusion in a miRNA-miRNA regulation network across 'Carcinoma' diseases and determine critical miRNAs which play an influential role. We demonstrate that using this model, we can find important disease-specific miRNAs which tend to work closely. These results prove to be significant based on validation with previously established methods.

References

[1]
Joseph Nalluri et al. Dismira: Prioritization of disease candidates in mirna-disease associations based on maximum weighted matching inference model and motif-based analysis. BMC Genomics, 16(Suppl 5):S12, 2015.
[2]
David Kempe, Jon Kleinberg, and Éva Tardos. Influential nodes in a diffusion model for social networks. In Automata, languages and programming, pages 1127--1138. Springer, 2005.
[3]
Andreas Ruepp et al. Phenomir: a knowledge base for microrna expression in diseases and biological processes. Genome biology, 11(1):R6, 2010.
[4]
Ming Lu et al. Tam: a method for enrichment and depletion analysis of a microrna category in a list of micrornas. BMC bioinformatics, 11(1):419, 2010.

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  • (2019)Evaluation of the Common Molecular Basis in Alzheimer’s and Parkinson’s DiseasesInternational Journal of Molecular Sciences10.3390/ijms2015373020:15(3730)Online publication date: 30-Jul-2019

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  1. Determining influential miRNA targets in diseases using influence diffusion model

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    cover image ACM Conferences
    BCB '15: Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics
    September 2015
    683 pages
    ISBN:9781450338530
    DOI:10.1145/2808719
    Permission to make digital or hard copies of part or all of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for third-party components of this work must be honored. For all other uses, contact the Owner/Author.

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    Published: 09 September 2015

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    Author Tags

    1. information diffusion
    2. miRNA-miRNA disease interaction

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    BCB '15 Paper Acceptance Rate 48 of 141 submissions, 34%;
    Overall Acceptance Rate 254 of 885 submissions, 29%

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    • (2019)Evaluation of the Common Molecular Basis in Alzheimer’s and Parkinson’s DiseasesInternational Journal of Molecular Sciences10.3390/ijms2015373020:15(3730)Online publication date: 30-Jul-2019

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