Redeeming pedigree data with an interactive error cleaning visualisation
Pages 741 - 744
Abstract
We describe a visual data cleansing application for pedigree genotype data, which is used to redeem otherwise unusable pedigree data sets. Biologists and bioinformaticians dynamically and iteratively mask pieces of information from a dirty data set and graduate towards a usable cleaned version of the data, which can then be saved and used in ongoing biological analyses. Cleansing of such data is complicated over and above simple error cleaning in that change or masking of the pedigree structure may shift errors to new parts of the pedigree. Thus a branching history of data manipulations is kept to allow users to restore the data and visualisation to any of the previous states it has travelled through.
References
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Bilgic, M., Licamele, L., Getoor, L. and Shneiderman, B. 2006. D-Dupe: An Interactive Tool for Entity Resolution in Social Networks. In Proceedings of the IEEE Symposium on Visual Analytics Science and Technology (Baltimore, USA, October 31 - November 02, 2006). VAST '06. IEEE, 43--50. DOI= http://dx.doi.org/10.1109/VAST.2006.261429.
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Paterson, T. and Law, A. 2011. GenotypeChecker: An interactive tool for checking the inheritance consistency of genotyped pedigrees. Animal Genetics. 42, 5(2011), 560--562. DOI= http://dx.doi.org/10.1111/j.1365-2052.2011.02183.x.
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- Redeeming pedigree data with an interactive error cleaning visualisation
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May 2012
846 pages
Copyright © 2012 Authors.
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- Consulta Umbria SRL
- University of Salerno: University of Salerno
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Association for Computing Machinery
New York, NY, United States
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Published: 21 May 2012
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AVI'12
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- University of Salerno
AVI'12: International Working Conference on Advanced Visual Interfaces
May 21 - 25, 2012
Capri Island, Italy
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Overall Acceptance Rate 128 of 490 submissions, 26%
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