Many of the unassignable spectra in proteomics data represent peptides with post-translational modifications.
This is a preview of subscription content, access via your institution
Relevant articles
Open Access articles citing this article.
-
Mzion enables deep and precise identification of peptides in data-dependent acquisition proteomics
Scientific Reports Open Access 29 April 2023
-
Nontarget mass spectrometry and in silico molecular characterization of air pollution from the Indian subcontinent
Communications Earth & Environment Open Access 18 February 2022
-
Robust unsupervised deconvolution of linear motifs characterizes 68 protein modifications at proteome scale
Scientific Reports Open Access 18 November 2021
Access options
Subscribe to this journal
Receive 12 print issues and online access
$209.00 per year
only $17.42 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
References
Link, A.J. et al. Nat. Biotechnol. 17, 676–682 (1999).
Chick, J.M. et al. Nat. Biotechnol. 33, 743–749 (2015).
Nielsen, M.L., Savitski, M.M. & Zubarev, R.A. Mol. Cell. Proteomics 5, 2384–2391 (2006).
LeDuc, R.D. & Kelleher, N.L. Curr. Protoc. Bioinformatics 19, 13.6 (2007).
Smith, L.M. & Kelleher, N.L. Nat. Methods 10, 186–187 (2013).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing financial interests.
Rights and permissions
About this article
Cite this article
Skinner, O., Kelleher, N. Illuminating the dark matter of shotgun proteomics. Nat Biotechnol 33, 717–718 (2015). https://doi.org/10.1038/nbt.3287
Published:
Issue Date:
DOI: https://doi.org/10.1038/nbt.3287
This article is cited by
-
Mzion enables deep and precise identification of peptides in data-dependent acquisition proteomics
Scientific Reports (2023)
-
Nontarget mass spectrometry and in silico molecular characterization of air pollution from the Indian subcontinent
Communications Earth & Environment (2022)
-
Robust unsupervised deconvolution of linear motifs characterizes 68 protein modifications at proteome scale
Scientific Reports (2021)
-
Focus on the spectra that matter by clustering of quantification data in shotgun proteomics
Nature Communications (2020)
-
TagGraph reveals vast protein modification landscapes from large tandem mass spectrometry datasets
Nature Biotechnology (2019)