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ORCIDElaine R. Mardis
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2020 – today
- 2024
[j15]Audrey E. Bollas, Andrei Rajkovic, Defne Ceyhan, Jeffrey B. Gaither, Elaine R. Mardis, Peter White
:
SNVstory: inferring genetic ancestry from genome sequencing data. BMC Bioinform. 25(1): 76 (2024)- 2023
- [j14]Kilannin Krysiak, Arpad M. Danos, Jason Saliba, Joshua F. McMichael, Adam C. Coffman, Susanna Kiwala, Erica K. Barnell, Lana Sheta, Cameron J. Grisdale, Lynzey Kujan, Shahil Pema, Jake Lever, Sarah Ridd, Nicholas C. Spies, Veronica Andric, Andreea Chiorean, Damian Tobias Rieke, Kaitlin A. Clark, Caralyn Reisle, Ajay C. Venigalla, Mark Evans, Payal Jani, Hideaki Takahashi, Avila Suda, Peter Horák, Deborah i Ritter, Xin Zhou, Benjamin J. Ainscough, Sean Delong, Chimene Kesserwan, Mario Lamping, Haolin Shen, Alex Marr, My Hoang, Kartik Singhal, Mariam Khanfar, Brian V. Li, Wan-Hsin Lin, Panieh Terraf, Laura B. Corson, Yasser Salama, Katie M. Campbell, Kirsten M. Farncombe, Jianling Ji, Xiaonan Zhao, Xinjie Xu, Rashmi Kanagal-Shamanna, Ian King, Kelsy C. Cotto, Zachary L. Skidmore, Jason R. Walker, Jinghui Zhang, Aleksandar Milosavljevic, Ronak Y. Patel, Rachel H. Giles, Raymond H. Kim, Lynn M. Schriml, Elaine R. Mardis, Steven J. M. Jones, Gordana Raca, Shruti Rao, Subha Madhavan, Alex H. Wagner, Malachi Griffith, Obi L. Griffith:
CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase. Nucleic Acids Res. 51(D1): 1230-1241 (2023)
2010 – 2019
- 2017
- [j13]Jin Zhang, Elaine R. Mardis, Christopher A. Maher:
INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery. Bioinform. 33(4): 555-557 (2017) - 2016
- [j12]Alex H. Wagner, Adam C. Coffman, Benjamin J. Ainscough, Nicholas C. Spies, Zachary L. Skidmore, Katie M. Campbell, Kilannin Krysiak, Deng Pan, Joshua F. McMichael, James M. Eldred, Jason R. Walker, Richard K. Wilson, Elaine R. Mardis, Malachi Griffith, Obi L. Griffith:
DGIdb 2.0: mining clinically relevant drug-gene interactions. Nucleic Acids Res. 44(Database-Issue): 1036-1044 (2016) - 2015
- [j11]Malachi Griffith, Obi L. Griffith, Scott M. Smith, Avinash Ramu, Matthew B. Callaway, Anthony M. Brummett, Michael J. Kiwala, Adam C. Coffman, Allison A. Regier, Benjamin J. Oberkfell, Gabriel E. Sanderson, Thomas P. Mooney, Nathaniel G. Nutter, Edward A. Belter, Feiyu Du, Robert L. Long, Travis E. Abbott, Ian T. Ferguson, David L. Morton, Mark M. Burnett, James V. Weible, Joshua B. Peck, Adam Dukes, Joshua F. McMichael, Justin T. Lolofie, Brian R. Derickson, Jasreet Hundal, Zachary L. Skidmore, Benjamin J. Ainscough, Nathan D. Dees, William S. Schierding, Cyriac Kandoth, Kyung H. Kim, Charles Lu, Christopher C. Harris, Nicole Maher, Christopher A. Maher, Vincent J. Magrini, Benjamin S. Abbott, Ken Chen, Eric Clark, Indraniel Das, Xian Fan, Amy E. Hawkins, Todd G. Hepler, Todd N. Wylie, Shawn M. Leonard, William E. Schroeder, Xiaoqi Shi, Lynn K. Carmichael, Matthew R. Weil, Richard W. Wohlstadter, Gary Stiehr, Michael D. McLellan, Craig S. Pohl, Christopher A. Miller, Daniel C. Koboldt, Jason R. Walker, James M. Eldred, David E. Larson, David J. Dooling, Li Ding, Elaine R. Mardis, Richard K. Wilson:
Genome Modeling System: A Knowledge Management Platform for Genomics. PLoS Comput. Biol. 11(7) (2015) - 2014
- [j10]Christopher A. Miller, Brian S. White, Nathan D. Dees, Malachi Griffith, John S. Welch, Obi L. Griffith, Ravi Vij, Michael H. Tomasson, Timothy A. Graubert, Matthew J. Walter, Matthew J. Ellis, William S. Schierding, John F. DiPersio, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, Li Ding:
SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution. PLoS Comput. Biol. 10(8) (2014) - 2012
- [j9]David E. Larson, Christopher C. Harris, Ken Chen, Daniel C. Koboldt, Travis E. Abbott, David J. Dooling, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, Li Ding:
SomaticSniper: identification of somatic point mutations in whole genome sequencing data. Bioinform. 28(3): 311-317 (2012) - [j8]Ken Chen, John W. Wallis, Cyriac Kandoth, Joelle M. Kalicki-Veizer, Karen L. Mungall, Andrew J. Mungall, Steven J. M. Jones, Marco A. Marra, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, John N. Weinstein, Li Ding:
BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data. Bioinform. 28(14): 1923-1924 (2012) - 2011
- [j7]Michael C. Wendl, John W. Wallis, Ling Lin, Cyriac Kandoth, Elaine R. Mardis, Richard K. Wilson, Li Ding:
PathScan: a tool for discerning mutational significance in groups of putative cancer genes. Bioinform. 27(12): 1595-1602 (2011) - 2010
- [j6]Daniel C. Koboldt, Li Ding, Elaine R. Mardis, Richard K. Wilson:
Challenges of sequencing human genomes. Briefings Bioinform. 11(5): 484-498 (2010) - [j5]Qunyuan Zhang, Li Ding, David E. Larson, Daniel C. Koboldt, Michael D. McLellan, Ken Chen, Xiaoqi Shi, Aldi T. Kraja, Elaine R. Mardis, Richard K. Wilson, Ingrid B. Borecki, Michael A. Province:
CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data. Bioinform. 26(4): 464-469 (2010)
2000 – 2009
- 2009
- [j4]Daniel C. Koboldt, Ken Chen, Todd Wylie, David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding:
VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinform. 25(17): 2283-2285 (2009) - 2008
- [j3]Carl J. Schmidt, Michael Romanov, Oliver Ryder, Vincent J. Magrini, Matthew T. Hickenbotham, Jarret Glasscock, Sean McGrath, Elaine R. Mardis, Lincoln D. Stein:
Gallus GBrowse: a unified genomic database for the chicken. Nucleic Acids Res. 36(Database-Issue): 719-723 (2008) - 2007
- [j2]William R. Jeck, Josephine A. Reinhardt, David A. Baltrus, Matthew T. Hickenbotham, Vincent J. Magrini, Elaine R. Mardis, Jeffery L. Dangl, Corbin D. Jones:
Extending assembly of short DNA sequences to handle error. Bioinform. 23(21): 2942-2944 (2007) - [j1]Michael C. Wendl, Scott M. Smith, Craig S. Pohl, David J. Dooling, Asif T. Chinwalla, Kevin Crouse, Todd G. Hepler, Shin Leong, Lynn K. Carmichael, Mike Nhan, Benjamin J. Oberkfell, Elaine R. Mardis, LaDeana W. Hillier, Richard K. Wilson:
Design and implementation of a generalized laboratory data model. BMC Bioinform. 8 (2007)
Coauthor Index
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