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2020 – today
- 2023
[j38]Sudeep Sahadevan, Thileepan Sekaran, Nadia Ashaf, Marko Fritz, Matthias W. Hentze
, Wolfgang Huber, Thomas Schwarzl:
htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets. Bioinform. 39(1) (2023)- [j37]Thomas Naake, Johannes Rainer, Wolfgang Huber:
MsQuality: an interoperable open-source package for the calculation of standardized quality metrics of mass spectrometry data. Bioinform. 39(10) (2023) - 2022
- [j36]Thomas Naake, Wolfgang Huber:
MatrixQCvis: shiny-based interactive data quality exploration for omics data. Bioinform. 38(4): 1181-1182 (2022) - [j35]Alina Batzilla, Junyan Lu, Jarno Kivioja, Kerstin Putzker, Joe Lewis, Thorsten Zenz, Wolfgang Huber:
Inferring tumor-specific cancer dependencies through integrating ex vivo drug response assays and drug-protein profiling. PLoS Comput. Biol. 18(8) (2022) - 2021
- [j34]Constantin Ahlmann-Eltze, Wolfgang Huber:
glmGamPoi: fitting Gamma-Poisson generalized linear models on single cell count data. Bioinform. 36(24): 5701-5702 (2021)
2010 – 2019
- 2018
- [j33]Irene Papatheodorou, Nuno A. Fonseca, Maria Keays, Y. Amy Tang, Elisabet Barrera, Wojciech Bazant, Melissa L. Burke, Anja Füllgrabe, Alfonso Muñoz-Pomer Fuentes, Nancy George, Laura Huerta, Satu Koskinen, Suhaib Mohammed, Matthew J. Geniza, Justin Preece, Pankaj Jaiswal, Andrew F. Jarnuczak, Wolfgang Huber, Oliver Stegle, Juan Antonio Vizcaíno, Alvis Brazma, Robert Petryszak:
Expression Atlas: gene and protein expression across multiple studies and organisms. Nucleic Acids Res. 46(Database-Issue): D246-D251 (2018) - [i1]Mike L. Smith, Andrzej K. Oles, Wolfgang Huber:
Authoring Bioconductor workflows with BiocWorkflowTools. F1000Research 7: 431 (2018) - 2016
- [j32]Robert Petryszak, Maria Keays, Y. Amy Tang, Nuno A. Fonseca, Elisabet Barrera, Tony Burdett, Anja Füllgrabe, Alfonso Muñoz-Pomer Fuentes, Simon Jupp, Satu Koskinen, Oliver Mannion, Laura Huerta, Karine Megy, Catherine Snow, Eleanor Williams, Mitra Barzine, Emma Hastings, Hendrik Weisser, James C. Wright, Pankaj Jaiswal, Wolfgang Huber, Jyoti Choudhary, Helen E. Parkinson, Alvis Brazma:
Expression Atlas update - an integrated database of gene and protein expression in humans, animals and plants. Nucleic Acids Res. 44(Database-Issue): 746-752 (2016) - 2015
- [j31]Simon Anders, Paul Theodor Pyl, Wolfgang Huber:
HTSeq - a Python framework to work with high-throughput sequencing data. Bioinform. 31(2): 166-169 (2015) - [j30]Felix A. Klein, Tibor Pakozdi, Simon Anders, Yad Ghavi-Helm, Eileen E. M. Furlong, Wolfgang Huber:
FourCSeq: analysis of 4C sequencing data. Bioinform. 31(19): 3085-3091 (2015) - [j29]Julian Gehring, Bernd Fischer, Michael F. Lawrence, Wolfgang Huber:
SomaticSignatures: inferring mutational signatures from single-nucleotide variants. Bioinform. 31(22): 3673-3675 (2015) - 2014
- [j28]Paul Theodor Pyl, Julian Gehring, Bernd Fischer, Wolfgang Huber:
h5vc: scalable nucleotide tallies with HDF5. Bioinform. 30(10): 1464-1466 (2014) - [j27]Robert Petryszak, Tony Burdett, Benedetto Fiorelli, Nuno A. Fonseca, Mar Gonzalez-Porta, Emma Hastings, Wolfgang Huber, Simon Jupp, Maria Keays, Nataliya Kryvych, Julie A. McMurry, John C. Marioni, James Malone, Karine Megy, Gabriella Rustici, Y. Amy Tang, Jan Taubert, Eleanor Williams, Oliver Mannion, Helen E. Parkinson, Alvis Brazma:
Expression Atlas update - a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. Nucleic Acids Res. 42(Database-Issue): 926-932 (2014) - 2013
- [j26]Danni Yu, Wolfgang Huber, Olga Vitek:
Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size. Bioinform. 29(10): 1275-1282 (2013) - [j25]Christoph Sommer, Michael Held, Bernd Fischer, Wolfgang Huber, Daniel Gerlich:
CellH5: a format for data exchange in high-content screening. Bioinform. 29(12): 1580-1582 (2013) - [j24]Grégoire Pau, Thomas Walter, Beate Neumann, Jean-Karim Hériché, Jan Ellenberg, Wolfgang Huber:
Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay. BMC Bioinform. 14: 308 (2013) - [j23]Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey:
Software for Computing and Annotating Genomic Ranges. PLoS Comput. Biol. 9(8) (2013) - 2011
- [j22]Matthew N. McCall, Peter N. Murakami, Margus Lukk, Wolfgang Huber, Rafael A. Irizarry:
Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples. BMC Bioinform. 12: 137 (2011) - [j21]Elin Axelsson, Thomas Sandmann, Thomas Horn, Michael Boutros, Wolfgang Huber, Bernd Fischer:
Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi. BMC Bioinform. 12: 342 (2011) - [r1]Robert Gentleman, Wolfgang Huber, Vincent J. Carey:
R Language. International Encyclopedia of Statistical Science 2011: 1159-1161 - 2010
- [j20]Grégoire Pau, Florian Fuchs, Oleg Sklyar, Michael Boutros, Wolfgang Huber:
EBImage - an R package for image processing with applications to cellular phenotypes. Bioinform. 26(7): 979-981 (2010)
2000 – 2009
- 2009
- [j19]Audrey Kauffmann, Robert Gentleman, Wolfgang Huber:
arrayQualityMetrics - a bioconductor package for quality assessment of microarray data. Bioinform. 25(3): 415-416 (2009) - [j18]Richard Bourgon, Eugenio Mancera, Alessandro Brozzi, Lars M. Steinmetz, Wolfgang Huber:
Array-based genotyping in S.cerevisiae using semi-supervised clustering. Bioinform. 25(8): 1056-1062 (2009) - [j17]Audrey Kauffmann, Tim F. Rayner, Helen E. Parkinson, Misha Kapushesky, Margus Lukk, Alvis Brazma, Wolfgang Huber:
Importing ArrayExpress datasets into R/Bioconductor. Bioinform. 25(16): 2092-2094 (2009) - [j16]Grégoire Pau, Wolfgang Huber:
The hwriter package: Composing HTML documents with R objects. R J. 1(1): 22 (2009) - 2008
- [j15]Denise Scholtens, Tony Chiang, Wolfgang Huber, Robert Gentleman:
Estimating node degree in bait-prey graphs. Bioinform. 24(2): 218-224 (2008) - [j14]Tony Chiang, Nianhua Li, Sandra E. Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, Wolfgang Huber:
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository. Bioinform. 24(8): 1100-1101 (2008) - [j13]Joern Toedling, Wolfgang Huber:
Analyzing ChIP-chip Data Using Bioconductor. PLoS Comput. Biol. 4(11) (2008) - 2007
- [j12]Charles Girardot, Oleg Sklyar, Sophie Grosz, Wolfgang Huber, Eileen E. M. Furlong:
CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data. Bioinform. 23(6): 771-773 (2007) - [j11]Tineke Casneuf, Yves Van de Peer, Wolfgang Huber:
In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation. BMC Bioinform. 8 (2007) - [j10]Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman:
Graphs in molecular biology. BMC Bioinform. 8(S-6) (2007) - [j9]Joern Toedling, Oleg Sklyar, Wolfgang Huber:
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts. BMC Bioinform. 8 (2007) - [j8]Joern Toedling, Oleg Sklyar, Tammo Krueger, Jenny J. Fischer, Silke Sperling, Wolfgang Huber:
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts. BMC Bioinform. 8 (2007) - 2006
- [j7]Wolfgang Huber, Joern Toedling, Lars M. Steinmetz:
Transcript mapping with high-density oligonucleotide tiling arrays. Bioinform. 22(16): 1963-1970 (2006) - [j6]Alexander Mehrle, Heiko Rosenfelder, Ingo Schupp, Coral del Val, Dorit Arlt, Florian Hahne, Stephanie Bechtel, Jeremy C. Simpson, Oliver Hofmann, Winston Hide, Karl-Heinz Glatting, Wolfgang Huber, Rainer Pepperkok, Annemarie Poustka, Stefan Wiemann:
The LIFEdb database in 2006. Nucleic Acids Res. 34(Database-Issue): 415-418 (2006) - 2005
- [j5]Andreas Buness, Wolfgang Huber, Klaus Steiner, Holger Sültmann, Annemarie Poustka:
arrayMagic: two-colour cDNA microarray quality control, preprocessing. Bioinform. 21(4): 554-556 (2005) - [j4]Steffen Durinck, Yves Moreau, Arek Kasprzyk, Sean R. Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber:
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinform. 21(16): 3439-3440 (2005) - 2004
- [j3]Wolfgang Huber, Robert Gentleman:
matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements. Bioinform. 20(10): 1651-1652 (2004) - [c8]Karl Hendling, Thomas Losert, Wolfgang Huber, Martin Jandl:
Interference minimizing bandwidth guaranteed on-line routing algorithm for traffic engineering. ICON 2004: 497-503 - [c7]Ulrich Mansmann, Markus Ruschhaupt, Wolfgang Huber:
Reproducible Statistical Analysis in Microarray Profiling Studies. PARA 2004: 939-948 - [c6]Martin Jankela, Wolfgang Puffitsch, Wolfgang Huber:
Towards a Rapid Prototyping Framework for Architecture Exploration in Embedded Systems. WISES 2004: 117-127 - 2003
- [c5]Martin Delvai, Wolfgang Huber, Peter P. Puschner, Andreas Steininger:
Processor Support for Temporal Predictability - The SPEAR Design Example. ECRTS 2003: 169-176 - 2002
- [c4]Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron:
Variance Stabilization and Robust Normalization for Microarray Gene Expression Data. COMPSTAT 2002: 623-628 - [c3]Wolfgang Huber, Anja von Heydebreck, Holger Sültmann, Annemarie Poustka, Martin Vingron:
Variance stabilization applied to microarray data calibration and to the quantification of differential expression. ISMB 2002: 96-104 - 2001
- [j2]Michael Pitman, Wolfgang Huber, Hans W. Horn, Andreas Krämer, Julia E. Rice, William C. Swope:
FLASHFLOOD: A 3D Field-based similarity search and alignment method for flexible molecules. J. Comput. Aided Mol. Des. 15(7): 587-612 (2001) - [c2]Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron:
Identifying splits with clear separation: a new class discovery method for gene expression data. ISMB (Supplement of Bioinformatics) 2001: 107-114
1990 – 1999
- 1995
- [j1]Burkhart Fischer, Stefan Gezeck, Wolfgang Huber:
The three-loop model: a neural network for the generation of saccadic reaction times. Biol. Cybern. 72(3): 185-196 (1995) - 1991
- [c1]Wolfgang Huber:
Die EG-Politik im Bereich des Informationsmarktes. ISI 1991: 11-25
Coauthor Index
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