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ORCIDJoão Carlos Setubal
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2020 – today
- 2020
[e3]João C. Setubal
, Waldeyr M. C. Silva:
Advances in Bioinformatics and Computational Biology - 13th Brazilian Symposium on Bioinformatics, BSB 2020, São Paulo, Brazil, November 23-27, 2020, Proceedings. Lecture Notes in Computer Science 12558, Springer 2020, ISBN 978-3-030-65774-1 [contents]
2010 – 2019
- 2019
- [j13]Kleber Padovani de Souza, João Carlos Setubal, André Carlos Ponce de Leon Ferreira de Carvalho, Guilherme Oliveira, Annie Chateau, Ronnie Alves:
Machine learning meets genome assembly. Briefings Bioinform. 20(6): 2116-2129 (2019) - [j12]S. Ha, Elena S. Dimitrova, Stefan Hoops, Doaa Altarawy, Mitra Ansariola, D. Deb, Jane Glazebrook, R. Hillmer, Hossameldin Shahin, Fumiaki Katagiri, J. McDowell, Molly Megraw, João C. Setubal, B. M. Tyler, Reinhard C. Laubenbacher:
PlantSimLab - a modeling and simulation web tool for plant biologists. BMC Bioinform. 20(1): 508 (2019) - 2018
- [j11]Lauro Ângelo Gonçalves de Moraes, Érica Barbosa Felestrino, Renata de Almeida Barbosa Assis, Diogo Matos, Joubert de Castro Lima, Leandro de Araújo Lima, Nalvo F. de Almeida Jr., João Carlos Setubal, Camila Carrião Machado Garcia, Leandro Márcio Moreira:
TabPath: interactive tables for metabolic pathway analysis. Bioinform. 34(6): 1040-1042 (2018) - 2017
- [j10]David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides:
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. 45(Database-Issue): D457-D465 (2017) - 2015
- [j9]João C. Setubal, Nalvo F. Almeida:
TCBB Special Section on the Brazilian Symposium on Bioinformatics 2013. IEEE ACM Trans. Comput. Biol. Bioinform. 12(3): 499 (2015) - 2014
- [i1]Andrew S. Warren, João C. Setubal:
Using Entropy Estimates for DAG-Based Ontologies. CoRR abs/1403.4887 (2014) - 2013
- [e2]João C. Setubal, Nalvo F. Almeida:
Advances in Bioinformatics and Computational Biology - 8th Brazilian Symposium on Bioinformatics, BSB 2013, Recife, Brazil, November 3-7, 2013, Proceedings. Lecture Notes in Computer Science 8213, Springer 2013, ISBN 978-3-319-02623-7 [contents] - 2012
- [j8]Zanoni Dias, Ulisses Dias, João C. Setubal:
SIS: a program to generate draft genome sequence scaffolds for prokaryotes. BMC Bioinform. 13: 96 (2012) - [c18]Zanoni Dias, Ulisses Dias, Lenwood S. Heath, João C. Setubal:
Sorting genomes using almost-symmetric inversions. SAC 2012: 1368-1374 - 2011
- [c17]Zanoni Dias, Ulisses Dias, João C. Setubal:
Using inversion signatures to generate draft genome sequence scaffolds. BCB 2011: 39-48 - [c16]Kuan Yang, João Carlos Setubal:
A whole genome simulator of prokaryote genome evolution. BCB 2011: 508-510 - [c15]Hugo Saldanha, Edward de Oliveira Ribeiro, Maristela Holanda, Aletéia P. F. Araújo, Genaína Nunes Rodrigues, Maria Emília Telles Walter, João Carlos Setubal, Alberto M. R. Dávila:
A Cloud Architecture for Bioinformatics Workflows. CLOSER 2011: 477-483 - 2010
- [j7]Andrew S. Warren, Jeremy S. Archuleta, Wu-chun Feng, João Carlos Setubal:
Missing genes in the annotation of prokaryotic genomes. BMC Bioinform. 11: 131 (2010) - [j6]Pavan Balaji, Wu-chun Feng, Heshan Lin, Jeremy S. Archuleta, Satoshi Matsuoka, Andrew S. Warren, João Carlos Setubal, Ewing L. Lusk, Rajeev Thakur, Ian T. Foster, Daniel S. Katz, Shantenu Jha, K. Shinpaugh, Susan Coghlan, Daniel A. Reed:
Global-scale distributed I/O with ParaMEDIC. Concurr. Comput. Pract. Exp. 22(16): 2266-2281 (2010) - [c14]Kuan Yang, João C. Setubal:
Homology prediction refinement and reconstruction of gene content and order of ancestral bacterial genomes. BCB 2010: 230-236 - [c13]Elijah Myers, Paul S. Fisher, Keith Irwin, Jinsuk Baek, João C. Setubal:
The Complexity and Application of Syntactic Pattern Recognition Using Finite Inductive Strings. PRIB 2010: 125-136 - [c12]Ulisses Dias, Zanoni Dias, João C. Setubal:
A Simulation Tool for the Study of Symmetric Inversions in Bacterial Genomes. RECOMB-CG 2010: 240-251
2000 – 2009
- 2009
- [j5]Andrew S. Warren, João Carlos Setubal:
The Genome Reverse Compiler: an explorative annotation tool. BMC Bioinform. 10 (2009) - 2007
- [j4]João Carlos Setubal, Sergio Verjovski-Almeida:
Brazilian Symposium on Bioinformatics. Comput. Biol. Medicine 37(2): 113-114 (2007) - [j3]E. E. Snyder, N. Kampanya, J. Lu, Eric K. Nordberg, H. R. Karur, Maulik Shukla, Jeetendra Soneja, Y. Tian, Tian Xue, Hyun Seung Yoo, Fengkai Zhang, C. Dharmanolla, N. V. Dongre, Joseph J. Gillespie, J. Hamelius, M. Hance, K. I. Huntington, D. Jukneliene, J. Koziski, L. Mackasmiel, S. P. Mane, V. Nguyen, A. Purkayastha, J. Shallom, G. Yu, Y. Guo, Joseph L. Gabbard, Deborah Hix, A. F. Azad, S. C. Baker, S. M. Boyle, Y. Khudyakov, X. J. Meng, C. Rupprecht, J. Vinje, Oswald Crasta, M. J. Czar, Allan Dickerman, J. Dana Eckart, Ron Kenyon, Rebecca Will, João C. Setubal, Bruno W. S. Sobral:
PATRIC: The VBI PathoSystems Resource Integration Center. Nucleic Acids Res. 35(Database-Issue): 401-406 (2007) - 2005
- [e1]João C. Setubal, Sergio Verjovski-Almeida:
Advances in Bioinformatics and Computational Biology, Brazilian Symposium on Bioinformatics, BSB 2005, Sao Leopoldo, Brazil, July 27-29, 2005, Proceedings. Lecture Notes in Computer Science 3594, Springer 2005, ISBN 3-540-28008-1 [contents] - 2004
- [c11]Luciano A. Digiampietri, Claudia Bauzer Medeiros, João C. Setubal:
A framewok based in Web services orchestration for bioinformatics workflow management. WOB 2004: 17-24 - [c10]Nalvo F. de Almeida Jr., João C. Setubal, Marcelo de Carvalho, Carlos Juliano M. Viana:
A method to determine homologous protein families based on graph cliques and profiles. WOB 2004: 97-100 - [c9]Patrícia Carrião, Marcelo Perez, João C. Setubal:
Parsing BLAST results to find pseudogenes in bacterial genomes. WOB 2004: 150-153 - 2003
- [c8]João Piazza, João C. Setubal:
New ways for automatic detection of contaminats in EST projects. WOB 2003: 1-9 - [c7]Luciano A. Digiampietri, Claudia Bauzer Medeiros, João C. Setubal:
A data model for comparative genomics. WOB 2003: 38-46 - [c6]Marcelo Perez, Patrícia Carrião, João C. Setubal:
A relational database for COG data. WOB 2003: 121-124 - 2000
- [j2]Renato Fonseca F. Werneck, João C. Setubal:
Finding Minimum Congestion Spanning Trees. ACM J. Exp. Algorithmics 5: 11 (2000)
1990 – 1999
- 1999
- [c5]Renato Fonseca F. Werneck, João C. Setubal, Arlindo Flávio da Conceição:
Finding Minimum Congestion Spanning Trees. WAE 1999: 60-71 - 1997
- [b1]João Carlos Setubal, João Meidanis:
Introduction to computational molecular biology. PWS Publishing Company 1997, ISBN 978-0-534-95262-4, pp. I-XIII, 1-296 - [c4]Boris V. Cherkassky, Andrew V. Goldberg, Paul Martin, João C. Setubal, Jorge Stolfi:
Augment or Push? A computational study of Bipartite Matching and Unit Capacity Flow Algorithms. WAE 1997: 1-10 - 1995
- [j1]Richard J. Anderson, João C. Setubal:
A Parallel Implementation of the Push-Relabel Algorithm for the Maximum Flow Problem. J. Parallel Distributed Comput. 29(1): 17-26 (1995) - [c3]Joao Meidanis, João C. Setubal:
Multiple Alignment of Biological Sequences with Gap Flexibility. LATIN 1995: 411-426 - 1992
- [c2]Richard J. Anderson, João C. Setubal:
On the Parallel Implementation of Goldberg's Maximum Flow Algorithm. SPAA 1992: 168-177 - 1991
- [c1]Richard J. Anderson, João Carlos Setubal:
Goldberg's Algorithm for Maximum Flow in Perspective: A Computational Study. Network Flows And Matching 1991: 1-18
Coauthor Index
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