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2020 – today
- 2021
[j17]Andrew D. Marquis
, Filip Jezek, David J. Pinsky, Daniel A. Beard:
Hypoxic pulmonary vasoconstriction as a regulator of alveolar-capillary oxygen flux: A computational model of ventilation-perfusion matching. PLoS Comput. Biol. 17(5) (2021)
2010 – 2019
- 2018
- [j16]Michael A. Moxley, Kalyan C. Vinnakota, Jason N. Bazil, Nathan R. Qi, Daniel A. Beard:
Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats. PLoS Comput. Biol. 14(2) (2018) - 2017
- [j15]Raghuram Thiagarajan, Amir Alavi, Jagdeep T. Podichetty, Jason N. Bazil, Daniel A. Beard:
The feasibility of genome-scale biological network inference using Graphics Processing Units. Algorithms Mol. Biol. 12(1): 8:1-8:13 (2017) - 2014
- [j14]Klas H. Pettersen, Scott M. Bugenhagen, Javaid Nauman, Daniel A. Beard, Stig W. Omholt:
Arterial Stiffening Provides Sufficient Explanation for Primary Hypertension. PLoS Comput. Biol. 10(5) (2014) - 2011
- [j13]Xin Li, Fan Wu, Feng Qi, Daniel A. Beard:
A database of thermodynamic properties of the reactions of glycolysis, the tricarboxylic acid cycle, and the pentose phosphate pathway. Database J. Biol. Databases Curation 2011 (2011) - [j12]Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère:
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput. Biol. 7(4) (2011)
2000 – 2009
- 2009
- [j11]Joep Vanlier, Fan Wu, Feng Qi, Kalyan C. Vinnakota, Yu Han, Ranjan K. Dash, F. Yang, Daniel A. Beard:
BISEN: Biochemical Simulation Environment. Bioinform. 25(6): 836-837 (2009) - [j10]Feng Qi, Ranjan K. Dash, Yu Han, Daniel A. Beard:
Generating rate equations for complex enzyme systems by a computer-assisted systematic method. BMC Bioinform. 10 (2009) - [j9]Fan Wu, Daniel A. Beard:
Roles of the creatine kinase system and myoglobin in maintaining energetic state in the working heart. BMC Syst. Biol. 3: 22 (2009) - [j8]Dexuan Xie, Ranjan K. Dash, Daniel A. Beard:
An improved algorithm and its parallel implementation for solving a general blood-tissue transport and metabolism model. J. Comput. Phys. 228(20): 7850-7861 (2009) - [j7]Daniel A. Beard, Martin J. Kushmerick:
Strong Inference for Systems Biology. PLoS Comput. Biol. 5(8) (2009) - 2008
- [j6]William J. Heuett, Daniel A. Beard, Hong Qian:
Linear analysis near a steady-state of biochemical networks: control analysis, correlation metrics and circuit theory. BMC Syst. Biol. 2: 44 (2008) - 2006
- [j5]Daniel A. Beard:
Correction: A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation. PLoS Comput. Biol. 2(1) (2006) - [j4]Daniel A. Beard:
Modeling of Oxygen Transport and Cellular Energetics Explains Observations on In Vivo Cardiac Energy Metabolism. PLoS Comput. Biol. 2(9) (2006) - 2005
- [j3]Daniel A. Beard:
A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation. PLoS Comput. Biol. 1(4) (2005) - 2003
- [j2]Qing Zhang, Daniel A. Beard, Tamar Schlick:
Constructing irregular surfaces to enclose macromolecular complexes for mesoscale modeling using the discrete surface charge optimization (DISCO) algorithm. J. Comput. Chem. 24(16): 2063-2074 (2003) - 2000
- [j1]Tamar Schlick, Daniel A. Beard, Jing Huang, Daniel Strahs, Xiaoliang Qian:
Computational challenges in simulating large DNA over long times. Comput. Sci. Eng. 2(6): 38-51 (2000)
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