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2020 – today
- 2024
[j23]Iris Pigeot
, Wolfgang Ahrens, Johannes Darms, Juliane Fluck, Martin Golebiewski, Horst K. Hahn, Xiaoming Hu, Timm Intemann, Elisa Kasbohm, Toralf Kirsten, Sebastian Klammt, Sophie Anne Ines Klopfenstein, Bianca Lassen-Schmidt, Manuela Peters, Ulrich Sax, Dagmar Waltemath, Carsten Oliver Schmidt:
Making Epidemiological and Clinical Studies FAIR Using the Example of COVID-19. Datenbank-Spektrum 24(2): 117-128 (2024)- [j22]Martin Golebiewski, Gary D. Bader, Padraig Gleeson, Thomas E. Gorochowski, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber:
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. J. Integr. Bioinform. 21(1) (2024) - [c14]Alina Troglio, Masoud Abedi, Martin Golebiewski, Frank A. Meineke, Toralf Kirsten, Barbara Namer, Oya Beyan, Ekaterina Kutafina:
Semi-Automatic Export of Electrophysiological Metadata to NFDI4Health Local Data Hubs: Use Case of Microneurography odML-Tables - A Technical Case Report. GMDS 2024: 40-48 - [c13]Xiaoming Hu, Haitham Abaza, René Hänsel, Masoud Abedi, Martin Golebiewski, Wolfgang Müller, Frank A. Meineke:
NFDI4Health Local Data Hubs Implementing a Tailored Metadata Schema for Health Data. GMDS 2024: 115-122 - 2023
- [j21]Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber:
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. J. Integr. Bioinform. 20(1) (2023) - [c12]Juliane Fluck, Martin Golebiewski, Johannes Darms:
Data Publication for Personalised Health Data A New Publication Standard Introduced by NFDI4Health. CoRDI 2023 - [c11]Frank A. Meineke, Martin Golebiewski, Xiaoming Hu, Toralf Kirsten, Matthias Löbe, Sebastian Klammt, Ulrich Sax, Wolfgang Müller:
NFDI4Health Local Data Hubs for Finding and Accessing Health Data Making Distributed Data Accessible Through a SEEK-Based Platform. CoRDI 2023 - [c10]Ulrich Sax, Christian Henke, Christian Draeger, Theresa Bender, Alessandra Kuntz, Martin Golebiewski, Hannes Ulrich, Matthias Löbe:
Provenance Core Data Set A Minimal Information Model for Data Provenance in Biomedical Research. CoRDI 2023 - [c9]Sophie Anne Ines Klopfenstein, Julian Sass, Carina Nina Vorisek, Felix Jorczik, Carsten Oliver Schmidt, Matthias Löbe, Martin Golebiewski, Haitham Abaza, Sylvia Thun:
Bringing Communities Together: Mapping the Investigation-Study-Assay-Model (ISA) to Fast Healthcare Interoperability Resources (FHIR). MedInfo 2023: 18-22 - [c8]Matthias Löbe, Aliaksandra Shutsko, Carsten Oliver Schmidt, Johannes Darms, Sophie Anne Ines Klopfenstein, Carina Nina Vorisek, Xiaoming Hu, Martin Golebiewski, Juliane Fluck:
A Semantic Representation of the NFDI4Health Metadata Schema Utilizing the CEDAR Workbench. SWAT4HCLS 2023: 143-144 - 2021
- [j20]Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath:
Specifications of standards in systems and synthetic biology: status and developments in 2021. J. Integr. Bioinform. 18(3) (2021) - [c7]Johannes Darms, Jörg Henke, Xiaoming Hu, Carsten Oliver Schmidt, Martin Golebiewski, Juliane Fluck:
Improving the FAIRness of Health Studies in Germany: The German Central Health Study Hub COVID-19. EFMI-STC 2021: 78-82 - [c6]Carsten Oliver Schmidt, Johannes Darms, Aliaksandra Shutsko, Matthias Löbe, Rajini Nagrani, Bastian Seifert, Birte Lindstädt, Martin Golebiewski, Sofiya Koleva, Theresa Bender, Christian Robert Bauer, Ulrich Sax, Xiaoming Hu, Michael Lieser, Vivien Junker, Sophie Klopfenstein, Atinkut Zeleke, Dagmar Waltemath, Iris Pigeot, Juliane Fluck:
Facilitating Study and Item Level Browsing for Clinical and Epidemiological COVID-19 Studies. MIE 2021: 794-798 - 2020
- [j19]Søren Brunak, Catherine Bjerre Collin, Katharina Eva Ó Cathaoir, Martin Golebiewski, Marc Kirschner, Ingrid Kockum, Heike Moser, Dagmar Waltemath:
Towards standardization guidelines for in silico approaches in personalized medicine. J. Integr. Bioinform. 17(2-3) (2020) - [j18]Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath:
Specifications of standards in systems and synthetic biology: status and developments in 2020. J. Integr. Bioinform. 17(2-3) (2020) - [j17]Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik-Sheriff, David P. Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers:
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). J. Integr. Bioinform. 17(2-3) (2020)
2010 – 2019
- 2019
- [j16]Maxwell Lewis Neal, Matthias König, David P. Nickerson, Goksel Misirli, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling, Daniel L. Cook, Sharon M. Crook, Miguel de Alba, Samuel H. Friedman, Alan Garny, John H. Gennari, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick S. Juty, Chris J. Myers, Brett G. Olivier, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer, Dagmar Waltemath:
Harmonizing semantic annotations for computational models in biology. Briefings Bioinform. 20(2): 540-550 (2019) - [j15]Falk Schreiber, Björn Sommer, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019. J. Integr. Bioinform. 16(2) (2019) - [r1]Martin Golebiewski:
Data Formats for Systems Biology and Quantitative Modeling. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 884-893 - 2018
- [j14]Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017. J. Integr. Bioinform. 15(1) (2018) - 2017
- [j13]Wolfgang Müller, Meik Bittkowski, Martin Golebiewski, Renate Kania, Maja Rey, Andreas Weidemann, Ulrike Wittig:
SABIO-RK, von Daten in der Publikation zur Suchlösung für Spezialisten. Datenbank-Spektrum 17(1): 21-28 (2017) - [j12]Katherine Wolstencroft, Olga Krebs, Jacky L. Snoep, Natalie J. Stanford, Finn Bacall, Martin Golebiewski, Rostyk Kuzyakiv, Quyen Nguyen, Stuart Owen, Stian Soiland-Reyes, Jakub Straszewski, David D. van Niekerk, Alan R. Williams, Lars Malmström, Bernd Rinn, Wolfgang Müller, Carole A. Goble:
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research. Nucleic Acids Res. 45(Database-Issue): D404-D407 (2017) - [c5]Chris J. Myers, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, David P. Nickerson, Falk Schreiber, Dagmar Waltemath:
A brief history of COMBINE. WSC 2017: 884-895 - 2016
- [j11]Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016. J. Integr. Bioinform. 13(3) (2016) - [c4]Olga Krebs, Katy Wolstencroft, Natalie J. Stanford, Norman Morrison, Martin Golebiewski, Rostyk Kuzyakiv, Stuart Owen, Quyen Nguyen, Jacky L. Snoep, Wolfgang Müller, Carole A. Goble:
FAIRDOM approach for semantic interoperability of systems biology data and models. ODLS 2016: 1-2 - 2015
- [j10]Katherine Wolstencroft, Stuart Owen, Olga Krebs, Quyen Nguyen, Natalie J. Stanford, Martin Golebiewski, Andreas Weidemann, Meik Bittkowski, Lihua An, David Shockley, Jacky L. Snoep, Wolfgang Müller, Carole A. Goble:
SEEK: a systems biology data and model management platform. BMC Syst. Biol. 9: 33 (2015) - [j9]Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Stephan Weise:
Specifications of Standards in Systems and Synthetic Biology. J. Integr. Bioinform. 12(2) (2015) - [c3]Olga Krebs, Katy Wolstencroft, Natalie J. Stanford, Norman Morrison, Martin Golebiewski, Stuart Owen, Quyen Nguyen, Jacky L. Snoep, Wolfgang Müller, Carole A. Goble:
FAIRDOM approach for semantic interoperability of systems biology data and models. ICBO 2015 - 2014
- [j8]Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère:
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. BMC Bioinform. 15: 369 (2014) - [i1]Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère:
COMBINE archive: One File To Share Them All. CoRR abs/1407.4992 (2014) - 2013
- [j7]Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère:
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst. Biol. 7: 116 (2013) - 2012
- [j6]Ulrike Wittig, Renate Kania, Martin Golebiewski, Maja Rey, Lei Shi, Lenneke Jong, Enkhjargal Algaa, Andreas Weidemann, Heidrun Sauer-Danzwith, Saqib Mir, Olga Krebs, Meik Bittkowski, Elina Wetsch, Isabel Rojas, Wolfgang Müller:
SABIO-RK - database for biochemical reaction kinetics. Nucleic Acids Res. 40(Database-Issue): 790-796 (2012)
2000 – 2009
- 2009
- [j5]Andreas Dräger, Hannes Planatscher, Dieudonné Motsou Wouamba, Adrian Schröder, Michael Hucka, Lukas Endler, Martin Golebiewski, Wolfgang Müller, Andreas Zell:
SBML2LATEX: Conversion of SBML files into human-readable reports. Bioinform. 25(11): 1455-1456 (2009) - [c2]Henriette Engelken, Martin Golebiewski, Meik Bittkowski, Fritz Hamm, Jasmin Saric, Ulrike Wittig, Wolfgang Müller, Uwe Reyle, Isabel Rojas:
Flache und semantische Verarbeitung von Namen biochemischer Verbindungen. GI Jahrestagung 2009: 687-692 - 2007
- [j4]Martin Golebiewski, Saqib Mir, Renate Kania, Olga Krebs, Andreas Weidemann, Ulrike Wittig, Isabel Rojas:
Integration of SABIO-RK in workbenches for kinetic model design. BMC Syst. Biol. 1(S-1): P4 (2007) - [j3]Isabel Rojas, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Ulrike Wittig:
SABIO-RK: a database for biochemical reactions and their kinetics. BMC Syst. Biol. 1(S-1): S6 (2007) - [j2]Isabel Rojas, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Ulrike Wittig:
Storing and Annotating of Kinetic Data. Silico Biol. 7(6): 37-44 (2007) - [j1]Olga Krebs, Martin Golebiewski, Renate Kania, Saqib Mir, Jasmin Saric, Andreas Weidemann, Ulrike Wittig, Isabel Rojas:
SABIO-RK: A data warehouse for biochemical reactions and their kinetics. J. Integr. Bioinform. 4(1) (2007) - 2006
- [c1]Ulrike Wittig, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Stefanie Anstein, Jasmin Saric, Isabel Rojas:
SABIO-RK: Integration and Curation of Reaction Kinetics Data. DILS 2006: 94-103
Coauthor Index
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