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ORCIDJonathan W. Berry
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- affiliation: Sandia National Laboratories, Albuquerque, NM, USA
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2020 – today
- 2024
[i8]Richard B. Lehoucq, Michael Weylandt, Jonathan W. Berry:
Optimal accuracy for linear sets of equations with the graph Laplacian. CoRR abs/2405.07877 (2024)- 2023
- [e1]Jonathan W. Berry, David B. Shmoys, Lenore Cowen, Uwe Naumann:
SIAM Conference on Applied and Computational Discrete Algorithms, ACDA 2023, Seattle, WA, USA, May 31 - June 2, 2023. SIAM 2023, ISBN 978-1-61197-771-4 [contents] - 2022
- [j10]Abdurrahman Yasar
, Sivasankaran Rajamanickam, Jonathan W. Berry, Ümit V. Çatalyürek:
A Block-Based Triangle Counting Algorithm on Heterogeneous Environments. IEEE Trans. Parallel Distributed Syst. 33(2): 444-458 (2022) - [c36]Daniel DeLayo, Kenny Zhang, Kunal Agrawal, Michael A. Bender, Jonathan W. Berry, Rathish Das, Benjamin Moseley, Cynthia A. Phillips:
Automatic HBM Management: Models and Algorithms. SPAA 2022: 147-159 - [i7]Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Ümit V. Çatalyürek:
PGAbB: A Block-Based Graph Processing Framework for Heterogeneous Platforms. CoRR abs/2209.04541 (2022) - 2021
- [j9]Shikha Singh, Prashant Pandey, Michael A. Bender, Jonathan W. Berry, Martin Farach-Colton, Rob Johnson, Thomas M. Kroeger, Cynthia A. Phillips:
Timely Reporting of Heavy Hitters Using External Memory. ACM Trans. Database Syst. 46(4): 14:1-14:35 (2021) - [c35]Stephen L. Olivier, Nathan D. Ellingwood, Jonathan W. Berry, Daniel M. Dunlavy:
Performance Portability of an SpMV Kernel Across Scientific Computing and Data Science Applications. HPEC 2021: 1-8 - [i6]Jonathan W. Berry, Cynthia A. Phillips, Alexandra M. Porter:
Connected Components for Infinite Graph Streams: Theory and Practice. CoRR abs/2112.00098 (2021) - 2020
- [c34]Prashant Pandey, Shikha Singh, Michael A. Bender, Jonathan W. Berry, Martin Farach-Colton, Rob Johnson, Thomas M. Kroeger, Cynthia A. Phillips:
Timely Reporting of Heavy Hitters using External Memory. SIGMOD Conference 2020: 1431-1446 - [c33]Rathish Das, Kunal Agrawal, Michael A. Bender, Jonathan W. Berry, Benjamin Moseley, Cynthia A. Phillips:
How to Manage High-Bandwidth Memory Automatically. SPAA 2020: 187-199 - [i5]Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Ümit V. Çatalyürek:
A Block-Based Triangle Counting Algorithm on Heterogeneous Environments. CoRR abs/2009.12457 (2020) - [i4]Alexander H. Foss, Richard B. Lehoucq, W. Zachary Stuart, J. Derek Tucker, Jonathan W. Berry:
A Deterministic Hitting-Time Moment Approach to Seed-set Expansion over a Graph. CoRR abs/2011.09544 (2020)
2010 – 2019
- 2019
- [j8]Jonathan W. Berry, Cynthia A. Phillips, Jared Saia:
Making social networks more human: A topological approach. Stat. Anal. Data Min. 12(6): 449-464 (2019) - [c32]Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Michael M. Wolf, Jeffrey S. Young, Ümit V. Çatalyürek:
Linear Algebra-Based Triangle Counting via Fine-Grained Tasking on Heterogeneous Environments : (Update on Static Graph Challenge). HPEC 2019: 1-4 - [c31]George M. Slota, Jonathan W. Berry, Simon D. Hammond, Stephen L. Olivier, Cynthia A. Phillips, Sivasankaran Rajamanickam:
Scalable generation of graphs for benchmarking HPC community-detection algorithms. SC 2019: 73:1-73:14 - 2018
- [c30]Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael M. Wolf, Jonathan W. Berry, Ümit V. Çatalyürek:
Fast Triangle Counting Using Cilk. HPEC 2018: 1-7 - [c29]Neil Butcher, Stephen L. Olivier, Jonathan W. Berry, Simon D. Hammond, Peter M. Kogge:
Optimizing for KNL Usage Modes When Data Doesn't Fit in MCDRAM. ICPP 2018: 37:1-37:10 - [i3]Michael A. Bender, Jonathan W. Berry, Martin Farach-Colton, Rob Johnson, Thomas M. Kroeger, Prashant Pandey, Cynthia A. Phillips, Shikha Singh:
The Online Event-Detection Problem. CoRR abs/1812.09824 (2018) - 2017
- [j7]Michael A. Bender, Jonathan W. Berry, Simon D. Hammond, K. Scott Hemmert, Samuel McCauley, Branden Moore, Benjamin Moseley, Cynthia A. Phillips, David S. Resnick, Arun Rodrigues:
Two-level main memory co-design: Multi-threaded algorithmic primitives, analysis, and simulation. J. Parallel Distributed Comput. 102: 213-228 (2017) - [c28]Michael M. Wolf, Mehmet Deveci, Jonathan W. Berry, Simon D. Hammond, Sivasankaran Rajamanickam:
Fast linear algebra-based triangle counting with KokkosKernels. HPEC 2017: 1-7 - 2016
- [c27]Michael A. Bender, Jonathan W. Berry, Rob Johnson, Thomas M. Kroeger, Samuel McCauley, Cynthia A. Phillips, Bertrand Simon, Shikha Singh, David Zage:
Anti-Persistence on Persistent Storage: History-Independent Sparse Tables and Dictionaries. PODS 2016: 289-302 - 2015
- [j6]Jonathan W. Berry, Luke A. Fostvedt, Daniel J. Nordman, Cynthia A. Phillips, C. Seshadhri, Alyson G. Wilson:
Why Do Simple Algorithms for Triangle Enumeration Work in the Real World? Internet Math. 11(6): 555-571 (2015) - [c26]Michael M. Wolf, Jonathan W. Berry, Dylan T. Stark:
A task-based linear algebra Building Blocks approach for scalable graph analytics. HPEC 2015: 1-6 - [c25]Jonathan W. Berry, Michael J. Collins, Aaron Kearns, Cynthia A. Phillips, Jared Saia, Randy Smith:
Cooperative Computing for Autonomous Data Centers. IPDPS 2015: 38-47 - [c24]Michael A. Bender, Jonathan W. Berry, Simon D. Hammond, K. Scott Hemmert, Samuel McCauley, Branden Moore, Benjamin Moseley, Cynthia A. Phillips, David S. Resnick, Arun Rodrigues:
Two-Level Main Memory Co-Design: Multi-threaded Algorithmic Primitives, Analysis, and Simulation. IPDPS 2015: 835-846 - [c23]Michael A. Bender, Jonathan W. Berry, Simon D. Hammond, Branden Moore, Benjamin Moseley, Cynthia A. Phillips:
k-Means Clustering on Two-Level Memory Systems. MEMSYS 2015: 197-205 - 2014
- [c22]Jonathan W. Berry, Luke K. Fostvedt, Daniel J. Nordman, Cynthia A. Phillips, C. Seshadhri, Alyson G. Wilson:
Why do simple algorithms for triangle enumeration work in the real world? ITCS 2014: 225-234 - [i2]Jonathan W. Berry, Luke A. Fostvedt, Daniel J. Nordman, Cynthia A. Phillips, C. Seshadhri, Alyson G. Wilson:
Why do simple algorithms for triangle enumeration work in the real world? CoRR abs/1407.1116 (2014) - [i1]Tim Mattson, David A. Bader, Jonathan W. Berry, Aydin Buluç, Jack J. Dongarra, Christos Faloutsos, John Feo, John R. Gilbert, Joseph Gonzalez, Bruce Hendrickson, Jeremy Kepner, Charles E. Leiserson, Andrew Lumsdaine, David A. Padua, Stephen W. Poole, Steven P. Reinhardt, Mike Stonebraker, Steve Wallach, Andrew Yoo:
Standards for Graph Algorithm Primitives. CoRR abs/1408.0393 (2014) - 2013
- [c21]Tim Mattson, David A. Bader, Jonathan W. Berry, Aydin Buluç, Jack J. Dongarra, Christos Faloutsos, John Feo, John R. Gilbert, Joseph Gonzalez, Bruce Hendrickson, Jeremy Kepner, Charles E. Leiserson, Andrew Lumsdaine, David A. Padua, Stephen Poole, Steven P. Reinhardt, Mike Stonebraker, Steve Wallach, Andrew Yoo:
Standards for graph algorithm primitives. HPEC 2013: 1-2 - [c20]Jonathan W. Berry, Matthew Oster, Cynthia A. Phillips, Steven J. Plimpton, Timothy M. Shead:
Maintaining connected components for infinite graph streams. BigMine 2013: 95-102 - 2011
- [c19]Jonathan W. Berry, Matthew Oster, Cynthia A. Phillips, Steven J. Plimpton:
Challenges in streaming graph analysis. MILCOM 2011: 1338
2000 – 2009
- 2009
- [j5]Regan Murray, William E. Hart, Cynthia A. Phillips, Jonathan W. Berry, Erik G. Boman, Robert D. Carr, Lee Ann Riesen, Jean-Paul Watson, Terra Haxton, Jonathan G. Herrmann, Robert Janke, George Gray, Thomas Taxon, James G. Uber, Kevin M. Morley:
US Environmental Protection Agency Uses Operations Research to Reduce Contamination Risks in Drinking Water. Interfaces 39(1): 57-68 (2009) - [c18]Brian W. Barrett, Jonathan W. Berry, Richard C. Murphy, Kyle B. Wheeler:
Implementing a portable Multi-threaded Graph Library: The MTGL on Qthreads. IPDPS 2009: 1-8 - 2008
- [j4]Bruce Hendrickson, Jonathan W. Berry:
Graph Analysis with High-Performance Computing. Comput. Sci. Eng. 10(2): 14-19 (2008) - 2007
- [j3]Andrew Lumsdaine, Douglas P. Gregor, Bruce Hendrickson, Jonathan W. Berry:
Challenges in Parallel Graph Processing. Parallel Process. Lett. 17(1): 5-20 (2007) - [c17]Kamesh Madduri, David A. Bader, Jonathan W. Berry, Joseph R. Crobak:
An Experimental Study of A Parallel Shortest Path Algorithm for Solving Large-Scale Graph Instances. ALENEX 2007 - [c16]William E. Hart, Jonathan W. Berry, Robert T. Heaphy, Cynthia A. Phillips:
EXACT: the experimental algorithmics computational toolkit. Experimental Computer Science 2007: 14 - [c15]Jonathan W. Berry, Bruce Hendrickson, Simon Kahan, Petr Konecny:
Software and Algorithms for Graph Queries on Multithreaded Architectures. IPDPS 2007: 1-14 - [c14]Joseph R. Crobak, Jonathan W. Berry, Kamesh Madduri, David A. Bader:
Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture. IPDPS 2007: 1-8 - [c13]Keith D. Underwood, Megan Vance, Jonathan W. Berry, Bruce Hendrickson:
Analyzing the Scalability of Graph Algorithms on Eldorado. IPDPS 2007: 1-8 - [c12]William E. Hart, Jonathan W. Berry, Erik G. Boman, Cynthia A. Phillips, Lee Ann Riesen, Jean-Paul Watson:
Limited-Memory Techniques for Sensor Placement in Water Distribution Networks. LION 2007: 125-137 - 2006
- [c11]John Cieslewicz, Jonathan W. Berry, Bruce Hendrickson, Kenneth A. Ross:
Realizing parallelism in database operations: insights from a massively multithreaded architecture. DaMoN 2006: 4 - [c10]Kamesh Madduri, David A. Bader, Jonathan W. Berry, Joseph R. Crobak:
Parallel Shortest Path Algorithms for Solving Large-Scale Instances. The Shortest Path Problem 2006: 249-290 - [c9]Richard C. Murphy, Jonathan W. Berry, William McLendon, Bruce Hendrickson, Douglas P. Gregor, Andrew Lumsdaine:
DFS: A Simple to Write Yet Difficult to Execute Benchmark. IISWC 2006: 175-177 - 2005
- [c8]Jonathan W. Berry, Daniel Hrozencik, Shrisha Rao, Zhizhang Shen:
Finding Median Set of Tree Structures in Synchronous Distributed Systems. CATA 2005: 7-12 - 2004
- [c7]Jonathan W. Berry, Daniel Hrozencik, Shrisha Rao, Zhizhang Shen:
Finding Central Sets of Tree Structures in Synchronous Distributed Systems. PDCS 2004: 201-208 - [c6]Eyjolfur Ingi Asgeirsson, Jonathan W. Berry, Cynthia A. Phillips, David J. Phillips, Clifford Stein, Joel Wein:
Scheduling an Industrial Production Facility. IPCO 2004: 116-131 - 2001
- [c5]Jonathan W. Berry:
Considerations for Future Designers of General Purpose Graph Software. Graphs and Discovery 2001: 1-6 - 2000
- [j2]Jonathan W. Berry, Nathaniel Dean, Mark K. Goldberg, Gregory E. Shannon, Steven Skiena:
LINK: a system for graph computation. Softw. Pract. Exp. 30(11): 1285-1302 (2000)
1990 – 1999
- 1999
- [j1]Jonathan W. Berry, Mark K. Goldberg:
Path Optimization for Graph Partitioning Problems. Discret. Appl. Math. 90(1-3): 27-50 (1999) - 1997
- [c4]Jonathan W. Berry, Nathaniel Dean, Mark K. Goldberg, Gregory E. Shannon, Steven Skiena:
Graph Drawing and Manipulation with LINK. GD 1997: 425-437 - [c3]Jonathan W. Berry:
Improving discrete mathematics and algorithms curricula with LINK. ITiCSE 1997: 14-20 - [c2]Jonathan W. Berry:
LINK: a software package for discrete mathematics and algorithms (demonstration). ITiCSE-WGR 1997: 145 - 1995
- [c1]Jonathan W. Berry, Mark K. Goldberg:
Path Optimization and Near-Greedy Analysis for Graph Partitioning: An Empirical Study. SODA 1995: 223-232
Coauthor Index
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