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ORCIDJinyan Li 0001
Jin-Yan Li 0001
Person information
- affiliation: University of Technology Sydney, Advanced Analytics Institute, Sydney, NSW, Asutralia
- affiliation (PhD 2011): University of Melbourne, Dept of CSSE, Australia
- affiliation (former): Nanyang Technological University, Singapore
- affiliation (former): Institute for Infocomm Research, Singapore
Other persons with the same name
- Jinyan Li (aka: Jin-Yan Li) — disambiguation page
- Jinyan Li 0002 (aka: Jinyan (Leo) Li) — Huawei Technologies CO. LTD, Shenzhen, China (and 1 more)
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2020 – today
- 2024
[j99]Tian Lan, Shuquan Su
, Pengyao Ping, Gyorgy Hutvagner, Tao Liu, Yi Pan, Jinyan Li:
Generating mutants of monotone affinity towards stronger protein complexes through adversarial learning. Nat. Mac. Intell. 6(3): 315-325 (2024)- 2023
- [j98]Xiaocai Zhang, Zhixun Zhao, Jinyan Li:
ARDE-N-BEATS: An Evolutionary Deep Learning Framework for Urban Traffic Flow Prediction. IEEE Internet Things J. 10(3): 2391-2403 (2023) - 2022
- [j97]Yuxin Liu, Li Wang, Tengfei Shi, Jinyan Li:
Detection of spam reviews through a hierarchical attention architecture with N-gram CNN and Bi-LSTM. Inf. Syst. 103: 101865 (2022) - 2021
- [j96]Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li, Michael Narag:
Substituting clinical features using synthetic medical phrases: Medical text data augmentation techniques. Artif. Intell. Medicine 120: 102167 (2021) - [j95]Tian Lan, Gyorgy Hutvagner, Qing Lan, Tao Liu, Jinyan Li:
Sequencing dropout-and-batch effect normalization for single-cell mRNA profiles: a survey and comparative analysis. Briefings Bioinform. 22(4) (2021) - [j94]Hui Peng, Yi Zheng, Zhixun Zhao, Jinyan Li:
Multigene editing: current approaches and beyond. Briefings Bioinform. 22(5) (2021) - [j93]Lu Huo, Jiao Jiao Li, Ling Chen, Zuguo Yu, Gyorgy Hutvagner, Jinyan Li:
Single-cell multi-omics sequencing: application trends, COVID-19, data analysis issues and prospects. Briefings Bioinform. 22(6) (2021) - [j92]Runbin Tang, Zuguo Yu, Yuanlin Ma, Yaoqun Wu, Yi-Ping Phoebe Chen, Limsoon Wong, Jinyan Li:
Genetic source completeness of HIV-1 circulating recombinant forms (CRFs) predicted by multi-label learning. Bioinform. 37(6): 750-758 (2021) - [j91]Xuan Zhang, Yuansheng Liu, Zuguo Yu, Michael Blumenstein, Gyorgy Hutvagner, Jin-Yan Li:
Instance-based error correction for short reads of disease-associated genes. BMC Bioinform. 22-S(6): 142 (2021) - [j90]Tao Tang, Jinyan Li:
Transformation of FASTA files into feature vectors for unsupervised compression of short reads databases. J. Bioinform. Comput. Biol. 19(1): 2050048:1-2050048:15 (2021) - [j89]Xiaocai Zhang, Yi Zheng, Zhixun Zhao, Yuansheng Liu, Michael Blumenstein, Jinyan Li:
Deep learning detection of anomalous patterns from bus trajectories for traffic insight analysis. Knowl. Based Syst. 217: 106833 (2021) - [j88]ShanShan Hu, DeNan Xia, Benyue Su, Peng Chen, Bing Wang, Jin-Yan Li:
A Convolutional Neural Network System to Discriminate Drug-Target Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1315-1324 (2021) - [j87]Xingyi Li, Ju Xiang, Jianxin Wang, Jinyan Li, Fang-Xiang Wu, Min Li:
FUNMarker: Fusion Network-Based Method to Identify Prognostic and Heterogeneous Breast Cancer Biomarkers. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2483-2491 (2021) - 2020
- [j86]Yuansheng Liu, Limsoon Wong, Jinyan Li:
Allowing mutations in maximal matches boosts genome compression performance. Bioinform. 36(18): 4675-4681 (2020) - [j85]Jie Zheng, Jinyan Li, Yun Zheng:
Guest Editorial for the 29th International Conference on Genome Informatics (GIW 2018). IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 726-727 (2020) - [j84]Yuansheng Liu, Chaowang Lan, Michael Blumenstein, Jinyan Li:
Bi-Level Error Correction for PacBio Long Reads. IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 899-905 (2020) - [j83]Xiaocai Zhang, Zhixun Zhao, Yi Zheng, Jinyan Li:
Prediction of Taxi Destinations Using a Novel Data Embedding Method and Ensemble Learning. IEEE Trans. Intell. Transp. Syst. 21(1): 68-78 (2020) - [c73]Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li:
Ontology-Guided Data Augmentation for Medical Document Classification. AIME 2020: 78-88 - [c72]Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li:
A Dictionary-based Oversampling Approach to Clinical Document Classification on Small and Imbalanced Dataset. WI/IAT 2020: 357-364
2010 – 2019
- 2019
- [j82]Yuansheng Liu, Zu-Guo Yu, Marcel E. Dinger, Jinyan Li:
Index suffix-prefix overlaps by (w, k)-minimizer to generate long contigs for reads compression. Bioinform. 35(12): 2066-2074 (2019) - [j81]Yuansheng Liu, Leo Yu Zhang, Jinyan Li:
Fast detection of maximal exact matches via fixed sampling of query K-mers and Bloom filtering of index K-mers. Bioinform. 35(22): 4560-4567 (2019) - [j80]Yi Zheng, Hui Peng, Shameek Ghosh, Chaowang Lan, Jinyan Li:
Inverse similarity and reliable negative samples for drug side-effect prediction. BMC Bioinform. 19-S(13): 91-104 (2019) - [j79]Yi Zheng, Hui Peng, Xiaocai Zhang, Zhixun Zhao, Xiaoying Gao, Jinyan Li:
DDI-PULearn: a positive-unlabeled learning method for large-scale prediction of drug-drug interactions. BMC Bioinform. 20-S(19): 661 (2019) - [j78]Yi Zheng, Hui Peng, Xiaocai Zhang, Zhixun Zhao, Xiaoying Gao, Jinyan Li:
Old drug repositioning and new drug discovery through similarity learning from drug-target joint feature spaces. BMC Bioinform. 20-S(23): 605 (2019) - [j77]Buzhong Zhang, Jinyan Li, Lijun Quan, Yu Chen, Qiang Lü:
Sequence-based prediction of protein-protein interaction sites by simplified long short-term memory network. Neurocomputing 357: 86-100 (2019) - [c71]Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li:
An Ontology-based Two-Stage Approach to Medical Text Classification with Feature Selection by Particle Swarm Optimisation. CEC 2019: 119-126 - [c70]Xiaocai Zhang, Xuan Zhang, Sunny Verma, Yuansheng Liu, Michael Blumenstein, Jinyan Li:
Detection of Anomalous Traffic Patterns and Insight Analysis from Bus Trajectory Data. PRICAI (3) 2019: 307-321 - [c69]Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li:
Stratifying Risk of Coronary Artery Disease Using Discriminative Knowledge-Guided Medical Concept Pairings from Clinical Notes. PRICAI (3) 2019: 457-473 - 2018
- [j76]Liang Zhao, Shaogui Wu, Jiawen Jiang, Wencui Li, Jie Luo, Jinyan Li:
Novel overlapping subgraph clustering for the detection of antigen epitopes. Bioinform. 34(12): 2061-2068 (2018) - [j75]Hui Peng, Yi Zheng, Zhixun Zhao, Tao Liu, Jinyan Li:
Recognition of CRISPR/Cas9 off-target sites through ensemble learning of uneven mismatch distributions. Bioinform. 34(17): i757-i765 (2018) - [j74]Hui Peng, Yi Zheng, Michael Blumenstein, Dacheng Tao, Jinyan Li:
CRISPR/Cas9 cleavage efficiency regression through boosting algorithms and Markov sequence profiling. Bioinform. 34(18): 3069-3077 (2018) - [j73]Buzhong Zhang, Jinyan Li, Qiang Lü:
Prediction of 8-state protein secondary structures by a novel deep learning architecture. BMC Bioinform. 19(1): 293:1-293:13 (2018) - [j72]Quanya Liu, Peng Chen, Bing Wang, Jun Zhang, Jinyan Li:
dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions. BMC Bioinform. 19(1): 455:1-455:7 (2018) - [j71]Yuanlin Ma, Zu-Guo Yu, Guo-Sheng Han, Jinyan Li, Vo Anh:
Identification of pre-microRNAs by characterizing their sequence order evolution information and secondary structure graphs. BMC Bioinform. 19-S(19): 25-35 (2018) - [j70]Yi Zheng, Hui Peng, Xiaocai Zhang, Zhixun Zhao, Jie Yin, Jinyan Li:
Predicting adverse drug reactions of combined medication from heterogeneous pharmacologic databases. BMC Bioinform. 19-S(19): 49-59 (2018) - [j69]Quanya Liu, Peng Chen, Bing Wang, Jun Zhang, Jinyan Li:
Hot spot prediction in protein-protein interactions by an ensemble system. BMC Syst. Biol. 12(9): 132 (2018) - [j68]Qian Liu, Shameek Ghosh, Jinyan Li, Limsoon Wong, Kotagiri Ramamohanarao:
Discovering pan-correlation patterns from time course data sets by efficient mining algorithms. Computing 100(4): 421-437 (2018) - [j67]Jinyan Li, Kenta Nakai, Yun Zheng, Kengo Sato, Limsoon Wong:
Introduction to Selected Papers from GIW2018. J. Bioinform. Comput. Biol. 16(6): 1802005:1-1802005:2 (2018) - [c68]Mahdi Abdollahi, Xiaoying Gao, Yi Mei, Shameek Ghosh, Jinyan Li:
Uncovering Discriminative Knowledge-Guided Medical Concepts for Classifying Coronary Artery Disease Notes. Australasian Conference on Artificial Intelligence 2018: 104-110 - [c67]Xiaocai Zhang, Yuansheng Liu, Yi Zheng, Zhixun Zhao, Jinyan Li, Yang Liu:
Distinction Between Ships and Icebergs in SAR Images Using Ensemble Loss Trained Convolutional Neural Networks. Australasian Conference on Artificial Intelligence 2018: 216-223 - [c66]Jinyan Li:
Version Space Completeness for Novel Hypothesis Induction in Biomedical Applications. IJCNN 2018: 1-8 - [c65]Jessica S. Rahman, Jinyan Li, Juanying Xie, Shoshana Fogelman, Michael Blumenstein:
Connectivity Based Method for Clustering Microbial Communities from Metagenomics Data of Water and Soil Samples. IJCNN 2018: 1-8 - [c64]Yi Zheng, Hui Peng, Xiaocai Zhang, Xiaoying Gao, Jinyan Li:
Predicting Drug Targets from Heterogeneous Spaces using Anchor Graph Hashing and Ensemble Learning. IJCNN 2018: 1-7 - [r7]Guozhu Dong, Jinyan Li:
Applications of Emerging Patterns for Microarray Gene Expression Data Analysis. Encyclopedia of Database Systems (2nd ed.) 2018 - [r6]Guozhu Dong, Jinyan Li:
Emerging Pattern Based Classification. Encyclopedia of Database Systems (2nd ed.) 2018 - [r5]Guozhu Dong, Jinyan Li:
Emerging Patterns. Encyclopedia of Database Systems (2nd ed.) 2018 - 2017
- [j66]Yuansheng Liu, Hui Peng, Limsoon Wong, Jinyan Li:
High-speed and high-ratio referential genome compression. Bioinform. 33(21): 3364-3372 (2017) - [j65]Liang Zhao, Qingfeng Chen, Wencui Li, Peng Jiang, Limsoon Wong, Jinyan Li:
MapReduce for accurate error correction of next-generation sequencing data. Bioinform. 33(23): 3844-3851 (2017) - [j64]Hui Peng, Chaowang Lan, Yi Zheng, Gyorgy Hutvagner, Dacheng Tao, Jinyan Li:
Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite. BMC Bioinform. 18(1): 193:1-193:17 (2017) - [j63]Jing Ren, Jiangning Song, John T. Ellis, Jinyan Li:
Staged heterogeneity learning to identify conformational B-cell epitopes from antigen sequences. BMC Genom. 18(S2) (2017) - [j62]Shameek Ghosh, Jinyan Li, Longbing Cao, Kotagiri Ramamohanarao:
Septic shock prediction for ICU patients via coupled HMM walking on sequential contrast patterns. J. Biomed. Informatics 66: 19-31 (2017) - [j61]Qingfeng Chen, Yiqi Wang, Baoshan Chen, Chengqi Zhang, Lusheng Wang, Jinyan Li:
Using propensity scores to predict the kinases of unannotated phosphopeptides. Knowl. Based Syst. 135: 60-76 (2017) - [j60]Qingfeng Chen, Chaowang Lan, Baoshan Chen, Lusheng Wang, Jinyan Li, Chengqi Zhang:
Exploring Consensus RNA Substructural Patterns Using Subgraph Mining. IEEE ACM Trans. Comput. Biol. Bioinform. 14(5): 1134-1146 (2017) - [c63]Yi Zheng, Shameek Ghosh, Jinyan Li:
An Optimized Drug Similarity Framework for Side-effect Prediction. CinC 2017 - [c62]Zili Zhou, Guandong Xu, Wenhao Zhu, Jinyan Li, Wu Zhang:
Structure embedding for knowledge base completion and analytics. IJCNN 2017: 737-743 - 2016
- [j59]Chaowang Lan, Qingfeng Chen, Jinyan Li:
Grouping miRNAs of similar functions via weighted information content of gene ontology. BMC Bioinform. 17(S-19): 159-170 (2016) - [j58]Chen Wang, Yong Fang, Jinyan Li:
Estimation of NON-WSSUS Channel for OFDM System: Exploiting Support Correlations through a Novel Adaptive Weighted Predict-Re-Estimate L1 Minimization. J. Commun. 11(2): 149-156 (2016) - [j57]Peng Chen, ShanShan Hu, Jun Zhang, Xin Gao, Jinyan Li, Junfeng Xia, Bing Wang:
A Sequence-Based Dynamic Ensemble Learning System for Protein Ligand-Binding Site Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 13(5): 901-912 (2016) - [j56]Shameek Ghosh, Mengling Feng, Hung T. Nguyen, Jinyan Li:
Hypotension Risk Prediction via Sequential Contrast Patterns of ICU Blood Pressure. IEEE J. Biomed. Health Informatics 20(5): 1416-1426 (2016) - [c61]Qian Liu, Jinyan Li, Limsoon Wong, Kotagiri Ramamohanarao:
Efficient Mining of Pan-Correlation Patterns from Time Course Data. ADMA 2016: 234-249 - [c60]Shameek Ghosh, Yi Zheng, Thorsten Lammers, Ying Ying Chen, Carolyn Fitzmaurice, Scott Johnston, Jinyan Li:
Deriving Public Sector Workforce Insights: A Case Study Using Australian Public Sector Employment Profiles. ADMA 2016: 764-774 - [c59]Yi Zheng, Chaowang Lan, Hui Peng, Jinyan Li:
Using constrained information entropy to detect rare adverse drug reactions from medical forums. EMBC 2016: 2460-2463 - [c58]Shameek Ghosh, Hung T. Nguyen, Jinyan Li:
Predicting short-term ICU outcomes using a sequential contrast motif based classification framework. EMBC 2016: 5612-5615 - [c57]Juanying Xie, Mingzhao Wang, Ying Zhou, Jinyan Li:
Coordinating Discernibility and Independence Scores of Variables in a 2D Space for Efficient and Accurate Feature Selection. ICIC (3) 2016: 116-127 - [c56]Qingfeng Chen, Chaowang Lan, Jinyan Li, Baoshan Chen, Lusheng Wang, Chengqi Zhang:
Depth-First Search Encoding of RNA Substructures. ICIC (1) 2016: 328-334 - [e3]Huiping Cao, Jinyan Li, Ruili Wang:
Trends and Applications in Knowledge Discovery and Data Mining - PAKDD 2016 Workshops, BDM, MLSDA, PACC, WDMBF Auckland, New Zealand, April 19, 2016, Revised Selected Papers. Lecture Notes in Computer Science 9794, Springer 2016, ISBN 978-3-319-42995-3 [contents] - 2015
- [j55]Renhua Song, Qian Liu, Tao Liu, Jinyan Li:
Connecting rules from paired miRNA and mRNA expression data sets of HCV patients to detect both inverse and positive regulatory relationships. BMC Genom. 16(S-2): S11 (2015) - [j54]Zhi-Qin Zhao, Guo-Sheng Han, Zu-Guo Yu, Jinyan Li:
Laplacian normalization and random walk on heterogeneous networks for disease-gene prioritization. Comput. Biol. Chem. 57: 21-28 (2015) - [j53]Chengjun Xie, Jie Zhang, Rui Li, Jinyan Li, Peilin Hong, Junfeng Xia, Peng Chen:
Automatic classification for field crop insects via multiple-task sparse representation and multiple-kernel learning. Comput. Electron. Agric. 119: 123-132 (2015) - [j52]Zhenhua Li, Ying He, Limsoon Wong, Jinyan Li:
Burial Level Change Defines a High Energetic Relevance for Protein Binding Interfaces. IEEE ACM Trans. Comput. Biol. Bioinform. 12(2): 410-421 (2015) - 2014
- [j51]Jing Ren, Qian Liu, John T. Ellis, Jinyan Li:
Tertiary structure-based prediction of conformational B-cell epitopes through B factors. Bioinform. 30(12): 264-273 (2014) - [j50]Qian Liu, Steven C. H. Hoi, Chee Keong Kwoh, Limsoon Wong, Jinyan Li:
Integrating water exclusion theory into βcontacts to predict binding free energy changes and binding hot spots. BMC Bioinform. 15: 57 (2014) - [j49]Qian Liu, Zhenhua Li, Jinyan Li:
Use B-factor related features for accurate classification between protein binding interfaces and crystal packing contacts. BMC Bioinform. 15(S-16): S3 (2014) - [j48]Chunxu Xu, Yong-Jin Liu, Qian Sun, Jinyan Li, Ying He:
Polyline-sourced Geodesic Voronoi Diagrams on Triangle Meshes. Comput. Graph. Forum 33(7): 161-170 (2014) - [j47]Yuanchun Zhou, MingJie Tang, Weike Pan, Jinyan Li, Weihang Wang, Jing Shao, Liang Wu, Jianhui Li, Qiang Yang, Baoping Yan:
Bird Flu Outbreak Prediction via Satellite Tracking. IEEE Intell. Syst. 29(4): 10-17 (2014) - [j46]Chuanxi Li, Peng Chen, Rujing Wang, Xiu-Jie Wang, Yaru Su, Jinyan Li:
PPI-IRO: a two-stage method for protein-protein interaction extraction based on interaction relation ontology. Int. J. Data Min. Bioinform. 10(1): 98-119 (2014) - [j45]Jing Ren, John T. Ellis, Jinyan Li:
Influenza A HA's conserved epitopes and broadly neutralizing antibodies: A prediction method. J. Bioinform. Comput. Biol. 12(5) (2014) - [j44]Liang Zhao, Steven C. H. Hoi, Zhenhua Li, Limsoon Wong, Hung T. Nguyen, Jinyan Li:
Coupling Graphs, Efficient Algorithmsand B-Cell Epitope Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 11(1): 7-16 (2014) - [c55]Shameek Ghosh, Mengling Feng, Hung T. Nguyen, Jinyan Li:
Risk Prediction for Acute Hypotensive Patients by Using Gap Constrained Sequential Contrast Patterns. AMIA 2014 - [c54]Shameek Ghosh, Mengling Feng, Hung T. Nguyen, Jinyan Li:
Predicting Heart Beats using Co-occurring Constrained Sequential Patterns. CinC 2014: 265-268 - [c53]Wei Wei, Junfu Yin, Jinyan Li, Longbing Cao:
Modeling Asymmetry and Tail Dependence among Multiple Variables by Using Partial Regular Vine. SDM 2014: 776-784 - [c52]Chunxu Xu, Yong-Jin Liu, Qian Sun, Jinyan Li, Ying He:
Geodesic Voronoi Diagrams with Polyline Generators. SGP Posters 2014 - 2013
- [j43]Zhenhua Li, Ying He, Qian Liu, Liang Zhao, Limsoon Wong, Chee Keong Kwoh, Hung T. Nguyen, Jinyan Li:
Structural analysis on mutation residues and interfacial water molecules for human TIM disease understanding. BMC Bioinform. 14(S-16): S11 (2013) - [j42]Qian Liu, Chee Keong Kwoh, Jinyan Li:
Binding Affinity Prediction for Protein-Ligand Complexes Based on β Contacts and B Factor. J. Chem. Inf. Model. 53(11): 3076-3085 (2013) - [c51]Huifeng Wei, Gelin Zhang, Peiguang Yan, Jiang Li, Xinben Zhang, Weijun Tong, Jie Luo, Jinyan Li, Kangkang Chen:
A seven-core photonic crystal fiber with high beam quality. OFC/NFOEC 2013: 1-3 - [c50]Wei Wei, Jinyan Li, Longbing Cao, Jingguang Sun, Chunming Liu, Mu Li:
Optimal Allocation of High Dimensional Assets through Canonical Vines. PAKDD (1) 2013: 366-377 - [p1]Jinyan Li, Limsoon Wong:
Emerging Pattern Based Rules Characterizing Subtypes of Leukemia. Contrast Data Mining 2013: 219-232 - 2012
- [j41]Zhenhua Li, Ying He, Limsoon Wong, Jinyan Li:
Progressive dry-core-wet-rim hydration trend in a nested-ring topology of protein binding interfaces. BMC Bioinform. 13: 51 (2012) - [j40]Liang Zhao, Limsoon Wong, Lanyuan Lu, Steven C. H. Hoi, Jinyan Li:
B-cell epitope prediction through a graph model. BMC Bioinform. 13(S-17): S20 (2012) - [j39]Zhenhua Li, Ying He, Longbing Cao, Limsoon Wong, Jinyan Li:
Conservation of water molecules in protein binding interfaces. Int. J. Bioinform. Res. Appl. 8(3/4): 228-244 (2012) - [j38]Peng Chen, Limsoon Wong, Jinyan Li:
Detection of Outlier Residues for Improving Interface Prediction in Protein Heterocomplexes. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1155-1165 (2012) - [c49]Wei Wei, Xuhui Fan, Jinyan Li, Longbing Cao:
Model the complex dependence structures of financial variables by using canonical vine. CIKM 2012: 1382-1391 - 2011
- [j37]Qian Liu, Steven C. H. Hoi, Chinh T. T. Su, Zhenhua Li, Chee Keong Kwoh, Limsoon Wong, Jinyan Li:
Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding? Bioinform. 27(18): 2529-2536 (2011) - [j36]Zhenhua Li, Limsoon Wong, Jinyan Li:
DBAC: A simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts. BMC Syst. Biol. 5(S-1): S5 (2011) - [j35]Kelvin Sim, Guimei Liu, Vivekanand Gopalkrishnan, Jinyan Li:
A case study on financial ratios via cross-graph quasi-bicliques. Inf. Sci. 181(1): 201-216 (2011) - [j34]MingJie Tang, Yuanchun Zhou, Jinyan Li, Weihang Wang, Peng Cui, YuanSheng Hou, Ze Luo, Jianhui Li, Fuming Lei, Baoping Yan:
Exploring the wild birds' migration data for the disease spread study of H5N1: a clustering and association approach. Knowl. Inf. Syst. 27(2): 227-251 (2011) - [j33]Liang Zhao, Limsoon Wong, Jinyan Li:
Antibody-Specified B-Cell Epitope Prediction in Line with the Principle of Context-Awareness. IEEE ACM Trans. Comput. Biol. Bioinform. 8(6): 1483-1494 (2011) - [j32]David Lo, Jinyan Li, Limsoon Wong, Siau-Cheng Khoo:
Mining Iterative Generators and Representative Rules for Software Specification Discovery. IEEE Trans. Knowl. Data Eng. 23(2): 282-296 (2011) - 2010
- [j31]Qian Liu, Jinyan Li:
Protein binding hot spots and the residue-residue pairing preference: a water exclusion perspective. BMC Bioinform. 11: 244 (2010) - [j30]Peng Chen, Jinyan Li:
Sequence-based identification of interface residues by an integrative profile combining hydrophobic and evolutionary information. BMC Bioinform. 11: 402 (2010) - [j29]Fei Luo, Juan Liu, Jinyan Li:
Discovering conditional co-regulated protein complexes by integrating diverse data sources. BMC Syst. Biol. 4(S-2): S4 (2010) - [j28]Mengling Feng, Guozhu Dong, Jinyan Li, Yap-Peng Tan, Limsoon Wong:
Pattern Space Maintenance for Data Updates and Interactive Mining. Comput. Intell. 26(3): 282-317 (2010) - [j27]Scott Mann, Jinyan Li, Yi-Ping Phoebe Chen:
Insights into Bacterial Genome Composition through Variable Target GC Content Profiling. J. Comput. Biol. 17(1): 79-96 (2010) - [j26]Xiaowen Liu, Jinyan Li, Lusheng Wang:
Modeling Protein Interacting Groups by Quasi-Bicliques: Complexity, Algorithm, and Application. IEEE ACM Trans. Comput. Biol. Bioinform. 7(2): 354-364 (2010) - [c48]MingJie Tang, Weihang Wang, Yexi Jiang, Yuanchun Zhou, Jinyan Li, Peng Cui, Ying Liu, Baoping Yan:
Birds Bring Flues? Mining Frequent and High Weighted Cliques from Birds Migration Networks. DASFAA (2) 2010: 359-369 - [c47]Jinyan Li, Qian Liu, Tao Zeng:
Negative correlations in collaboration: concepts and algorithms. KDD 2010: 463-472
2000 – 2009
- 2009
- [j25]Jinyan Li, Qian Liu:
'Double water exclusion': a hypothesis refining the O-ring theory for the hot spots at protein interfaces. Bioinform. 25(6): 743-750 (2009) - [j24]Xinghuo Zeng, Jian Pei, Ke Wang, Jinyan Li:
PADS: a simple yet effective pattern-aware dynamic search method for fast maximal frequent pattern mining. Knowl. Inf. Syst. 20(3): 375-391 (2009) - [j23]Kelvin Sim, Jinyan Li, Vivekanand Gopalkrishnan, Guimei Liu:
Mining maximal quasi-bicliques: Novel algorithm and applications in the stock market and protein networks. Stat. Anal. Data Min. 2(4): 255-273 (2009) - [j22]Guimei Liu, Kelvin Sim, Jinyan Li, Limsoon Wong:
Efficient mining of distance-based subspace clusters. Stat. Anal. Data Min. 2(5-6): 427-444 (2009) - [c46]MingJie Tang, Yuanchun Zhou, Peng Cui, Weihang Wang, Jinyan Li, Haiting Zhang, YuanSheng Hou, Baoping Yan:
Discovery of Migration Habitats and Routes of Wild Bird Species by Clustering and Association Analysis. ADMA 2009: 288-301 - [c45]Qian Liu, Yi-Ping Phoebe Chen, Jinyan Li:
High Functional Coherence in k-Partite Protein Cliques of Protein Interaction Networks. BIBM 2009: 111-117 - [r4]Haiquan Li, Jinyan Li, Xuechun Zhao:
Discovery of Protein Interaction Sites. Encyclopedia of Data Warehousing and Mining 2009: 683-688 - [r3]Guozhu Dong, Jinyan Li:
Applications of Emerging Patterns for Microarray Gene Expression Data Analysis. Encyclopedia of Database Systems 2009: 107 - [r2]Guozhu Dong, Jinyan Li:
Emerging Pattern Based Classification. Encyclopedia of Database Systems 2009: 985 - [r1]Guozhu Dong, Jinyan Li:
Emerging Patterns. Encyclopedia of Database Systems 2009: 985-988 - 2008
- [j21]Guimei Liu, Jinyan Li, Limsoon Wong:
A new concise representation of frequent itemsets using generators and a positive border. Knowl. Inf. Syst. 17(1): 35-56 (2008) - [c44]Mengling Feng, Jinyan Li, Limsoon Wong, Yap-Peng Tan:
Negative Generator Border for Effective Pattern Maintenance. ADMA 2008: 217-228 - [c43]Suryani Lukman, Kelvin Sim, Jinyan Li, Yi-Ping Phoebe Chen:
Interacting Amino Acid Preferences of 3D Pattern Pairs at the Binding Sites of Transient and Obligate Protein Complexes. APBC 2008: 69-78 - [c42]Xiaowen Liu, Jinyan Li, Lusheng Wang:
Quasi-bicliques: Complexity and Binding Pairs. COCOON 2008: 255-264 - [c41]Jinyan Li, Kelvin Sim, Guimei Liu, Limsoon Wong:
Maximal Quasi-Bicliques with Balanced Noise Tolerance: Concepts and Co-clustering Applications. SDM 2008: 72-83 - [c40]David Lo, Siau-Cheng Khoo, Jinyan Li:
Mining and Ranking Generators of Sequential Patterns. SDM 2008: 553-564 - 2007
- [j20]Jinyan Li, Qiang Yang:
Strong Compound-Risk Factors: Efficient Discovery Through Emerging Patterns and Contrast Sets. IEEE Trans. Inf. Technol. Biomed. 11(5): 544-552 (2007) - [j19]Jinyan Li, Guimei Liu, Haiquan Li, Limsoon Wong:
Maximal Biclique Subgraphs and Closed Pattern Pairs of the Adjacency Matrix: A One-to-One Correspondence and Mining Algorithms. IEEE Trans. Knowl. Data Eng. 19(12): 1625-1637 (2007) - [c39]Guimei Liu, Jinyan Li, Kelvin Sim, Limsoon Wong:
Distance Based Subspace Clustering with Flexible Dimension Partitioning. ICDE 2007: 1250-1254 - [c38]Jinyan Li, Guimei Liu, Limsoon Wong:
Mining statistically important equivalence classes and delta-discriminative emerging patterns. KDD 2007: 430-439 - [c37]Jinyan Li, Xiaohua Hu:
Workshop BioDM'07 - An Overview. PAKDD Workshops 2007: 110-111 - [c36]Mengling Feng, Guozhu Dong, Jinyan Li, Yap-Peng Tan, Limsoon Wong:
Evolution and Maintenance of Frequent Pattern Space When Transactions Are Removed. PAKDD 2007: 489-497 - [c35]Kuralmani Vellaisamy, Jinyan Li:
Multidimensional Decision Support Indicator (mDSI) for Time Series Stock Trend Prediction. PAKDD 2007: 841-848 - [c34]Ben Niu, Qiang Yang, Jinyan Li, Shiu Chi-keung, Sankar K. Pal:
Discovering Patterns of DNA Methylation: Rule Mining with Rough Sets and Decision Trees, and Comethylation Analysis. PReMI 2007: 389-397 - [e2]Takashi Washio, Zhi-Hua Zhou, Joshua Zhexue Huang, Xiaohua Hu, Jinyan Li, Chao Xie, Jieyue He, Deqing Zou, Kuan-Ching Li, Mário M. Freire:
Emerging Technologies in Knowledge Discovery and Data Mining, PAKDD 2007, International Workshops, Nanjing, China, May 22-25, 2007, Revised Selected Papers. Lecture Notes in Computer Science 4819, Springer 2007, ISBN 978-3-540-77016-9 [contents] - 2006
- [j18]Haiquan Li, Jinyan Li, Limsoon Wong:
Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale. Bioinform. 22(8): 989-996 (2006) - [c33]Jinyan Li, Haiquan Li, Limsoon Wong, Jian Pei, Guozhu Dong:
Minimum Description Length Principle: Generators Are Preferable to Closed Patterns. AAAI 2006: 409-414 - [c32]Ling Chen, Sourav S. Bhowmick, Jinyan Li:
COWES: Clustering Web Users Based on Historical Web Sessions. DASFAA 2006: 541-556 - [c31]Guimei Liu, Kelvin Sim, Jinyan Li:
Efficient Mining of Large Maximal Bicliques. DaWaK 2006: 437-448 - [c30]Kelvin Sim, Jinyan Li, Vivekanand Gopalkrishnan, Guimei Liu:
Mining Maximal Quasi-Bicliques to Co-Cluster Stocks and Financial Ratios for Value Investment. ICDM 2006: 1059-1063 - [c29]Ling Chen, Sourav S. Bhowmick, Jinyan Li:
Mining Temporal Indirect Associations. PAKDD 2006: 425-434 - [c28]Kuralmani Vellaisamy, Jinyan Li:
Bayesian Approaches to Ranking Sequential Patterns Interestingness. PRICAI 2006: 241-250 - [c27]Guimei Liu, Jinyan Li, Limsoon Wong, Wynne Hsu:
Positive Borders or Negative Borders: How to Make Lossless Generator Based Representations Concise. SDM 2006: 469-473 - [e1]Jinyan Li, Qiang Yang, Ah-Hwee Tan:
Data Mining for Biomedical Applications, PAKDD 2006 Workshop, BioDM 2006, Singapore, April 9, 2006, Proceedings. Lecture Notes in Computer Science 3916, Springer 2006, ISBN 3-540-33104-2 [contents] - 2005
- [j17]Haiquan Li, Jinyan Li:
Discovery of stable and significant binding motif pairs from PDB complexes and protein interaction datasets. Bioinform. 21(3): 314-324 (2005) - [j16]Huiqing Liu, Hao Han, Jinyan Li, Limsoon Wong:
DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences. Bioinform. 21(5): 671-673 (2005) - [j15]Huiqing Liu, Jinyan Li, Limsoon Wong:
Use of extreme patient samples for outcome prediction from gene expression data. Bioinform. 21(16): 3377-3384 (2005) - [j14]Jinyan Li, Limsoon Wong, Qiang Yang:
Guest Editors' Introduction: Data Mining in Bioinformatics. IEEE Intell. Syst. 20(6): 16-18 (2005) - [j13]Jinyan Li, Limsoon Wong:
Structural geography of the space of emerging patterns. Intell. Data Anal. 9(6): 567-588 (2005) - [j12]Guozhu Dong, Jinyan Li:
Mining border descriptions of emerging patterns from dataset pairs. Knowl. Inf. Syst. 8(2): 178-202 (2005) - [j11]Di Huang, Tommy W. S. Chow, Eden W. M. Ma, Jinyan Li:
Efficient selection of discriminative genes from microarray gene expression data for cancer diagnosis. IEEE Trans. Circuits Syst. I Regul. Pap. 52-I(9): 1909-1918 (2005) - [j10]Jinyan Li, Haiquan Li:
Using Fixed Point Theorems to Model the Binding in Protein-Protein Interactions. IEEE Trans. Knowl. Data Eng. 17(8): 1079-1087 (2005) - [c26]Jinyan Li, Huiqing Liu, Ling Li:
Diagnostic Rules Induced by an Ensemble Method for Childhood Leukemia. BIBE 2005: 246-249 - [c25]Guozhu Dong, Chunyu Jiang, Jian Pei, Jinyan Li, Limsoon Wong:
Mining Succinct Systems of Minimal Generators of Formal Concepts. DASFAA 2005: 175-187 - [c24]Jinyan Li, Haiquan Li, Donny Soh, Limsoon Wong:
A Correspondence Between Maximal Complete Bipartite Subgraphs and Closed Patterns. PKDD 2005: 146-156 - [c23]Haiquan Li, Jinyan Li, Limsoon Wong, Mengling Feng, Yap-Peng Tan:
Relative risk and odds ratio: a data mining perspective. PODS 2005: 368-377 - 2004
- [j9]Jinyan Li, Hwee-Leng Ong:
Feature Space Transformation for Better Understanding Biological and Medical Classifications. J. Res. Pract. Inf. Technol. 36(3): 131-144 (2004) - [j8]Shao-Wu Meng, Zhuo Zhang, Jinyan Li:
Twelve C2H2 zinc-finger genes on human chromosome 19 can be each translated into the same type of protein after frameshifts. Bioinform. 20(1): 1-4 (2004) - [j7]Jinyan Li, Thomas Manoukian, Guozhu Dong, Kotagiri Ramamohanarao:
Incremental Maintenance on the Border of the Space of Emerging Patterns. Data Min. Knowl. Discov. 9(1): 89-116 (2004) - [j6]Huiqing Liu, Hao Han, Jinyan Li, Limsoon Wong:
Using amino acid patterns to accurately predict translation initiation sites. Silico Biol. 4(3): 255-269 (2004) - [j5]Jinyan Li, Guozhu Dong, Kotagiri Ramamohanarao, Limsoon Wong:
DeEPs: A New Instance-Based Lazy Discovery and Classification System. Mach. Learn. 54(2): 99-124 (2004) - [c22]Jinyan Li, Huiqing Liu, Limsoon Wong:
Use of Built-in Features in the Interpretation of High-dimensional Cancer Diagnosis Data.. APBC 2004: 67-74 - [c21]Huiqing Liu, Jinyan Li, Limsoon Wong:
Selection of Patient Samples and Genes for Outcome Prediction. CSB 2004: 382-392 - [c20]Jinyan Li, Kotagiri Ramamohanarao:
A Tree-Based Approach to the Discovery of Diagnostic Biomarkers for Ovarian Cancer. PAKDD 2004: 682-691 - [c19]Haiquan Li, Jinyan Li, Soon-Heng Tan, See-Kiong Ng:
Discovery of Binding Motif Pairs from Protein Complex Structural Data and Protein Interaction Sequence Data. Pacific Symposium on Biocomputing 2004: 312-32 - 2003
- [j4]Jinyan Li, Huiqing Liu, James R. Downing, Allen Eng-Juh Yeoh, Limsoon Wong:
Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients. Bioinform. 19(1): 71-78 (2003) - [c18]Vladimir B. Bajic, Vladimir Brusic, Jinyan Li, See-Kiong Ng, Limsoon Wong:
From Informatics to Bioinformatics. APBC 2003: 3-12 - [c17]Jinyan Li, Hwee-Leng Ong:
Feature Space Transformation and Decision Results Interpretation. APBC 2003: 129-137 - [c16]Jinyan Li, Huiqing Liu, See-Kiong Ng, Limsoon Wong:
Discovery of significant rules for classifying cancer diagnosis data. ECCB 2003: 93-102 - [c15]Jinyan Li, Huiqing Liu:
Ensembles of Cascading Trees. ICDM 2003: 585-588 - [c14]Jinyan Li, See-Kiong Ng, Limsoon Wong:
Bioinformatics Adventures in Database Research. ICDT 2003: 31-46 - [c13]Jinyan Li, Huiqing Liu, Limsoon Wong:
Mean-entropy discretized features are effective for classifying high-dimensional biomedical data. BIOKDD 2003: 17-24 - [c12]Jinyan Li, Limsoon Wong:
Using Rules to Analyse Bio-medical Data: A Comparison between C4.5 and PCL. WAIM 2003: 254-265 - 2002
- [j3]Jinyan Li, Limsoon Wong:
Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns. Bioinform. 18(5): 725-734 (2002) - [j2]Jinyan Li, Limsoon Wong:
Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns . Bioinform. 18(10): 1406-1407 (2002) - [c11]Jinyan Li, Limsoon Wong:
Solving the Fragmentation Problem of Decision Trees by Discovering Boundary Emerging Patterns. ICDM 2002: 653-656 - [c10]Jinyan Li, Limsoon Wong:
Geography of Differences between Two Classes of Data. PKDD 2002: 325-337 - 2001
- [j1]Jinyan Li, Guozhu Dong, Kotagiri Ramamohanarao:
Making Use of the Most Expressive Jumping Emerging Patterns for Classification. Knowl. Inf. Syst. 3(2): 131-145 (2001) - [c9]Jinyan Li, Kotagiri Ramamohanarao, Guozhu Dong:
Combining the Strength of Pattern Frequency and Distance for Classification. PAKDD 2001: 455-466 - 2000
- [c8]Jinyan Li, Kotagiri Ramamohanarao, Guozhu Dong:
Emerging Patterns and Classification. ASIAN 2000: 15-32 - [c7]Jinyan Li, Kotagiri Ramamohanarao, Guozhu Dong:
The Space of Jumping Emerging Patterns and Its Incremental Maintenance Algorithms. ICML 2000: 551-558 - [c6]Jinyan Li, Guozhu Dong, Kotagiri Ramamohanarao:
Making Use of the Most Expressive Jumping Emerging Patterns for Classification. PAKDD 2000: 220-232 - [c5]Jinyan Li, Guozhu Dong, Kotagiri Ramamohanarao:
Instance-Based Classification by Emerging Patterns. PKDD 2000: 191-200
1990 – 1999
- 1999
- [c4]Guozhu Dong, Xiuzhen Zhang, Limsoon Wong, Jinyan Li:
CAEP: Classification by Aggregating Emerging Patterns. Discovery Science 1999: 30-42 - [c3]Guozhu Dong, Jinyan Li:
Efficient Mining of Emerging Patterns: Discovering Trends and Differences. KDD 1999: 43-52 - [c2]Jinyan Li, Xiuzhen Zhang, Guozhu Dong, Kotagiri Ramamohanarao, Qun Sun:
Efficient Mining of High Confidience Association Rules without Support Thresholds. PKDD 1999: 406-411 - 1998
- [c1]Guozhu Dong, Jinyan Li:
Interestingness of Discovered Association Rules in Terms of Neighborhood-Based Unexpectedness. PAKDD 1998: 72-86
Coauthor Index
[j92] [j86] [j68] [j67] [j66] [j65] [c61] [j52] [j50] [j44] [j43] [p1] [j41] [j40] [j39] [j38] [j37] [j36] [j33] [j32] [j28] [j22] [j21] [c44] [c41] [j19] [c39] [c38] [c36] [j18] [c33] [c27] [j16] [j15] [j14] [j13] [c25] [c24] [c23] [j6] [j5] [c22] [c21] [j4] [c18] [c16] [c14] [c13] [c12] [j3] [j2] [c11] [c10] [c4]
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