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2020 – today
- 2024
[j14]Seungyeon Choi, Sangmin Seo, Byung Ju Kim, Chihyun Park
, Sanghyun Park:
PIDiff: Physics informed diffusion model for protein pocket-specific 3D molecular generation. Comput. Biol. Medicine 180: 108865 (2024)- [j13]Sangmin Seo, Jonghwan Choi, Seungyeon Choi, Jieun Lee, Chihyun Park, Sanghyun Park:
Pseq2Sites: Enhancing protein sequence-based ligand binding-site prediction accuracy via the deep convolutional network and attention mechanism. Eng. Appl. Artif. Intell. 127(Part A): 107257 (2024) - [j12]Jieun Lee, Sangmin Seo, Jonghwan Choi, Sanghyun Park:
K2vTune: A workload-aware configuration tuning for RocksDB. Inf. Process. Manag. 61(1): 103567 (2024) - [j11]Hyosoon Jang, Sangmin Seo, Sanghyun Park, Byung Ju Kim, Geon-Woo Choi, Jonghwan Choi, Chihyun Park:
De novo drug design through gradient-based regularized search in information-theoretically controlled latent space. J. Comput. Aided Mol. Des. 38(1): 32 (2024) - [c31]Seungyeon Choi, Sangmin Seo, Sanghyun Park:
SPIN: SE(3)-Invariant Physics Informed Network for Binding Affinity Prediction. ECAI 2024: 169-176 - [c30]Seungyeon Choi, Sangmin Seo, Jonghwan Choi, Chihyun Park, Sanghyun Park:
DrDiff: Drug Response Prediction Through Controllable Diffusion-GE and Graph Attention Network. ECAI 2024: 1623-1630 - [i1]Seungyeon Choi, Sangmin Seo, Sanghyun Park:
SPIN: SE(3)-Invariant Physics Informed Network for Binding Affinity Prediction. CoRR abs/2407.11057 (2024) - 2023
- [j10]Shengmin Piao, Jonghwan Choi, Sangmin Seo, Sanghyun Park:
SELF-EdiT: Structure-constrained molecular optimisation using SELFIES editing transformer. Appl. Intell. 53(21): 25868-25880 (2023) - [j9]Jonghwan Choi, Sangmin Seo, Seungyeon Choi, Shengmin Piao, Chihyun Park, Sung Jin Ryu, Byung Ju Kim, Sanghyun Park:
ReBADD-SE: Multi-objective molecular optimisation using SELFIES fragment and off-policy self-critical sequence training. Comput. Biol. Medicine 157: 106721 (2023) - [j8]Ju Yeon Seo, Kyeonghun Kim, Sangmin Seo, Sanghyun Park:
DARK: Deep automatic Redis knobs tuning system depending on the persistence method. Expert Syst. Appl. 221: 119697 (2023) - [j7]Jonghwan Choi, Sangmin Seo, Sanghyun Park:
COMA: efficient structure-constrained molecular generation using contractive and margin losses. J. Cheminformatics 15(1): 8 (2023) - 2021
- [j6]Sangmin Seo, Jonghwan Choi, Sanghyun Park, Jaegyoon Ahn:
Binding affinity prediction for protein-ligand complex using deep attention mechanism based on intermolecular interactions. BMC Bioinform. 22(1): 542 (2021) - [c29]Jonghwan Choi, Sangmin Seo, Jinuk Park, Sanghyun Park:
MolBit: De novo Drug Design via Binary Representations of SMILES for avoiding the Posterior Collapse Problem. BIBM 2021: 364-367 - 2020
- [j5]Adrián Castelló, Rafael Mayo Gual, Sangmin Seo, Pavan Balaji, Enrique S. Quintana-Ortí, Antonio J. Peña:
Analysis of Threading Libraries for High Performance Computing. IEEE Trans. Computers 69(9): 1279-1292 (2020)
2010 – 2019
- 2019
- [j4]Hanqi Guo, Wenbin He, Sangmin Seo, Han-Wei Shen, Emil M. Constantinescu, Chunhui Liu, Tom Peterka:
Extreme-Scale Stochastic Particle Tracing for Uncertain Unsteady Flow Visualization and Analysis. IEEE Trans. Vis. Comput. Graph. 25(9): 2710-2724 (2019) - [c28]Shintaro Iwasaki, Abdelhalim Amer, Kenjiro Taura, Sangmin Seo, Pavan Balaji:
BOLT: Optimizing OpenMP Parallel Regions with User-Level Threads. PACT 2019: 29-42 - 2018
- [j3]Sangmin Seo, Jonghwan Choi, Soon Kil Ahn, Kil Won Kim, Jaekwang Kim, Jaehyuck Choi, Jinho Kim, Jaegyoon Ahn:
Prediction of GPCR-Ligand Binding Using Machine Learning Algorithms. Comput. Math. Methods Medicine 2018: 6565241:1-6565241:5 (2018) - [j2]Sangmin Seo, Abdelhalim Amer, Pavan Balaji, Cyril Bordage, George Bosilca, Alex Brooks, Philip H. Carns, Adrián Castelló, Damien Genet, Thomas Hérault, Shintaro Iwasaki, Prateek Jindal, Laxmikant V. Kalé, Sriram Krishnamoorthy, Jonathan Lifflander, Huiwei Lu, Esteban Meneses, Marc Snir, Yanhua Sun, Kenjiro Taura, Peter H. Beckman:
Argobots: A Lightweight Low-Level Threading and Tasking Framework. IEEE Trans. Parallel Distributed Syst. 29(3): 512-526 (2018) - 2017
- [c27]Hoang-Vu Dang, Sangmin Seo, Abdelhalim Amer, Pavan Balaji:
Advanced Thread Synchronization for Multithreaded MPI Implementations. CCGrid 2017: 314-324 - [c26]Adrián Castelló, Sangmin Seo, Rafael Mayo, Pavan Balaji, Enrique S. Quintana-Ortí, Antonio J. Peña:
GLT: A Unified API for Lightweight Thread Libraries. Euro-Par 2017: 470-481 - [c25]Adrián Castelló, Sangmin Seo, Rafael Mayo, Pavan Balaji, Enrique S. Quintana-Ortí, Antonio J. Peña:
GLTO: On the Adequacy of Lightweight Thread Approaches for OpenMP Implementations. ICPP 2017: 60-69 - [c24]Ken Raffenetti, Abdelhalim Amer, Lena Oden, Charles Archer, Wesley Bland, Hajime Fujita, Yanfei Guo, Tomislav Janjusic, Dmitry Durnov, Michael Blocksome, Min Si, Sangmin Seo, Akhil Langer, Gengbin Zheng, Masamichi Takagi, Paul K. Coffman, Jithin Jose, Sayantan Sur, Alexander Sannikov, Sergey Oblomov, Michael Chuvelev, Masayuki Hatanaka, Xin Zhao, Paul F. Fischer, Thilina Rathnayake, Matthew Otten, Misun Min, Pavan Balaji:
Why is MPI so slow?: analyzing the fundamental limits in implementing MPI-3.1. SC 2017: 62 - 2016
- [c23]Adrián Castelló, Antonio J. Peña, Sangmin Seo, Rafael Mayo, Pavan Balaji, Enrique S. Quintana-Ortí:
A Review of Lightweight Thread Approaches for High Performance Computing. CLUSTER 2016: 471-480 - [c22]Jintao Meng, Sangmin Seo, Pavan Balaji, Yanjie Wei, Bingqiang Wang, Shengzhong Feng:
SWAP-Assembler 2: Optimization of De Novo Genome Assembler at Extreme Scale. ICPP 2016: 195-204 - [c21]Daniel A. Ellsworth, Tapasya Patki, Swann Perarnau, Sangmin Seo, Abdelhalim Amer, Judicael A. Zounmevo, Rinku Gupta, Kazutomo Yoshii, Henry Hoffmann, Allen D. Malony, Martin Schulz, Peter H. Beckman:
Systemwide Power Management with Argo. IPDPS Workshops 2016: 1118-1121 - [c20]Philip H. Carns, John Jenkins, Charles D. Cranor, Scott Atchley, Sangmin Seo, Shane Snyder, Robert B. Ross:
Enabling NVM for Data-Intensive Scientific Services. INFLOW@OSDI 2016 - 2015
- [j1]Thanh Tuan Dao, Jungwon Kim, Sangmin Seo, Bernhard Egger, Jaejin Lee:
A Performance Model for GPUs with Caches. IEEE Trans. Parallel Distributed Syst. 26(7): 1800-1813 (2015) - [c19]Jintao Meng, Yanjie Wei, Sangmin Seo, Pavan Balaji:
SWAP-Assembler 2: Scalable Genome Assembler towards Millions of Cores - Practice and Experience. CCGRID 2015: 769-772 - [c18]Sangmin Seo, Robert Latham, Junchao Zhang, Pavan Balaji:
Implementation and Evaluation of MPI Nonblocking Collective I/O. CCGRID 2015: 1084-1091 - [c17]Wesley Bland, Huiwei Lu, Sangmin Seo, Pavan Balaji:
Lessons Learned Implementing User-Level Failure Mitigation in MPICH. CCGRID 2015: 1123-1126 - [c16]Huiwei Lu, Sangmin Seo, Pavan Balaji:
MPI+ULT: Overlapping Communication and Computation with User-Level Threads. HPCC/CSS/ICESS 2015: 444-454 - 2013
- [c15]Sangmin Seo, Jun Lee, Gangwon Jo, Jaejin Lee:
Automatic OpenCL work-group size selection for multicore CPUs. PACT 2013: 387-397 - [c14]Jin-A. Hong, Sangmin Seo, Namgi Kim, Byoung-Dai Lee:
A study of secure data transmissions in mobile cloud computing from the energy consumption side. ICOIN 2013: 250-255 - 2012
- [c13]Choonki Jang, Jun Lee, Sangmin Seo, Jaejin Lee:
An automatic code overlaying technique for multicores with explicitly-managed memory hierarchies. CGO 2012: 219-229 - [c12]Jungwon Kim, Sangmin Seo, Jun Lee, Jeongho Nah, Gangwon Jo, Jaejin Lee:
SnuCL: an OpenCL framework for heterogeneous CPU/GPU clusters. ICS 2012: 341-352 - [c11]Jungwon Kim, Sangmin Seo, Jun Lee, Jeongho Nah, Gangwon Jo, Jaejin Lee:
OpenCL as a unified programming model for heterogeneous CPU/GPU clusters. PPoPP 2012: 299-300 - 2011
- [c10]Jun Lee, Jungwon Kim, Junghyun Kim, Sangmin Seo, Jaejin Lee:
An OpenCL Framework for Homogeneous Manycores with No Hardware Cache Coherence. PACT 2011: 56-67 - [c9]Sangmin Seo, Junghyun Kim, Jaejin Lee:
SFMalloc: A Lock-Free and Mostly Synchronization-Free Dynamic Memory Allocator for Manycores. PACT 2011: 253-263 - [c8]Junghyun Kim, Sangmin Seo, Jaejin Lee:
An efficient software shared virtual memory for the single-chip cloud computer. APSys 2011: 4 - [c7]Sangmin Seo, Gangwon Jo, Jaejin Lee:
Performance characterization of the NAS Parallel Benchmarks in OpenCL. IISWC 2011: 137-148 - [c6]Jungwon Kim, Sangmin Seo, Jun Lee, Jeongho Nah, Gangwon Jo, Jaejin Lee:
OpenCL as a Programming Model for GPU Clusters. LCPC 2011: 76-90 - 2010
- [c5]Jaejin Lee, Jungwon Kim, Sangmin Seo, Seungkyun Kim, Jung-Ho Park, Honggyu Kim, Thanh Tuan Dao, Yongjin Cho, Sung Jong Seo, Seung Hak Lee, Seung Mo Cho, Hyo Jung Song, Sang-Bum Suh, Jong-Deok Choi:
An OpenCL framework for heterogeneous multicores with local memory. PACT 2010: 193-204 - [c4]Jun Lee, Sangmin Seo, Jaejin Lee:
A software-SVM-based transactional memory for multicore accelerator architectures with local memory. PACT 2010: 567-568 - [c3]Jaejin Lee, Jun Lee, Sangmin Seo, Jungwon Kim, Seungkyun Kim, Zehra Sura:
COMIC++: A software SVM system for heterogeneous multicore accelerator clusters. HPCA 2010: 1-12
2000 – 2009
- 2009
- [c2]Sangmin Seo, Jaejin Lee, Zehra Sura:
Design and implementation of software-managed caches for multicores with local memory. HPCA 2009: 55-66 - 2008
- [c1]Jaejin Lee, Sangmin Seo, Chihun Kim, Junghyun Kim, Posung Chun, Zehra Sura, Jungwon Kim, Sangyong Han:
COMIC: a coherent shared memory interface for cell be. PACT 2008: 303-314
Coauthor Index
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