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ORCIDRandy W. Heiland
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2020 – today
- 2024
[i2]Marco Ruscone, Andrea Checcoli, Randy W. Heiland, Emmanuel Barillot, Paul Macklin, Laurence Calzone, Vincent Noël
:
Building multiscale models with PhysiBoSS, an agent-based modeling tool. CoRR abs/2406.18371 (2024)
2010 – 2019
- 2019
- [j10]Gaëlle Letort, Arnau Montagud, Gautier Stoll, Randy W. Heiland, Emmanuel Barillot, Paul Macklin, Andrei Yu. Zinovyev, Laurence Calzone:
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling. Bioinform. 35(7): 1188-1196 (2019) - [j9]Randy W. Heiland, Daniel Mishler, Tyler Zhang, Eric Bower, Paul Macklin:
xml2jupyter: Mapping parameters between XML and Jupyter widgets. J. Open Source Softw. 4(39): 1408 (2019) - [j8]Michael P. Snyder, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai, Marishka Brown, Zorina S. Galis, Long Cai, Cole Trapnell, Dana Jackson, Garry P. Nolan, William James Greenleaf, Sylvia K. Plevritis, Sara Ahadi, Stephanie A. Nevins, Hayan Lee, Christian Martijn Schuerch, Sarah Black, Vishal Gautham Venkataraaman, Ed Esplin, Aaron Horning, Amir Bahmani, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Bernd Bodenmiller, Todd Brusko, Michael Clare-Salzler, Harry Nick, Kevin Otto, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond Harris, Mark P. de Caestecker, Agnes B. Fogo, Raf Van de Plas, Ken Lau, Guo-Cheng Yuan, Qian Zhu, Ruben Dries, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena, Dong Hye Ye, Kristin E. Burnum-Johnson, Paul D. Piehowski, Charles Ansong, Ying Zhu, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Sarah A. Teichmann, Benedict Paten, Robert F. Murphy, Jian Ma, Vladimir Yu. Kiselev, Carl Kingsford, Allyson Ricarte, Maria Keays, Sushma Anand Akoju, Matthew Ruffalo, Margaret Vella, Chuck McCallum, Leonard E. Cross, Samuel H. Friedman, Randy W. Heiland, Bruce William Herr II, Paul Macklin, Ellen M. Quardokus, Lisel Record, James P. Sluka, Griffin M. Weber, Philip D. Blood, Alexander Ropelewski, William Shirey, Robin M. Scibek, Paula M. Mabee, W. Christopher Lenhardt, Kimberly Robasky, Stavros Michailidis, John C. Marioni, Andrew Butler, Tim Stuart, Eyal Fisher, Shila Ghazanfar, Gökcen Eraslan, Tommaso Biancalani, Eeshit D. Vaishnav, Pothur Srinivas, Aaron Pawlyk, Salvatore Sechi, Elizabeth L. Wilder, James Anderson:
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. Nat. 574(7777): 187-192 (2019) - [c8]Aasakiran Madamanchi, Randy W. Heiland, Paul Macklin, Alejandra J. Magana:
Students' Use of Metacognitive Skills in Undergraduate Research Experiences in Computational Modeling. FIE 2019: 1-5 - [c7]Mats Rynge, Karan Vahi, Ewa Deelman, Anirban Mandal, Ilya Baldin, Omkar Bhide, Randy W. Heiland, Von Welch, Raquel Hill, William L. Poehlman, F. Alex Feltus:
Integrity Protection for Scientific Workflow Data: Motivation and Initial Experiences. PEARC 2019: 17:1-17:8 - 2018
- [j7]Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Chase Cockrell, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Randy W. Heiland, Gary An, Paul Macklin:
High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow. BMC Bioinform. 19-S(18): 81-97 (2018) - [j6]Ahmadreza Ghaffarizadeh, Randy W. Heiland, Samuel H. Friedman, Shannon M. Mumenthaler, Paul Macklin:
PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems. PLoS Comput. Biol. 14(2) (2018) - 2017
- [c6]Sandra Gesing, Michael G. Zentner, Juliana Casavan, Betsy Hillery, Mihaela Vorvoreanu, Randy W. Heiland, Suresh Marru, Marlon E. Pierce, Nayiri Mullinix, Nancy Maron:
Science Gateways Incubator: Software Sustainability Meets Community Needs. eScience 2017: 477-485 - 2015
- [c5]Randy W. Heiland, Scott Koranda, Suresh Marru, Marlon E. Pierce, Von Welch:
Authentication and Authorization Considerations for a Multi-tenant Service. SCREAM@HPDC 2015: 29-35 - 2014
- [j5]James P. Sluka, Abbas Shirinifard, Maciej Swat, Alin Cosmanescu, Randy W. Heiland, James A. Glazier:
The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents. Bioinform. 30(16): 2367-2374 (2014) - 2013
- [i1]Randy W. Heiland, Betsy Thomas, Von Welch, Craig Jackson:
Toward a Research Software Security Maturity Model. CoRR abs/1309.1677 (2013) - 2012
- [c4]Randy W. Heiland, Abbas Shirinifard, Maciej Swat, Gilberto L. Thomas, James P. Sluka, Andrew Lumsdaine, Benjamin Zaitlen, James A. Glazier:
Visualizing cells and their connectivity graphs for CompuCell3D. BioVis 2012: 85-90 - 2010
- [c3]Randy W. Heiland, Maciej Swat, Benjamin Zaitlen, James A. Glazier, Andrew Lumsdaine:
Workflows for parameter studies of multi-cell modeling. SpringSim 2010: 94
2000 – 2009
- 2008
- [j4]Arti Singh, Adebayo Olowoyeye, Peter H. Baenziger, Jessica Dantzer, Maricel G. Kann, Predrag Radivojac, Randy W. Heiland, Sean D. Mooney:
MutDB: update on development of tools for the biochemical analysis of genetic variation. Nucleic Acids Res. 36(Database-Issue): 815-819 (2008) - 2007
- [j3]Andrew J. Moad, Charles W. Moad, John M. Perry, Ronald D. Wampler, G. Scott Goeken, Nathan J. Begue, Tian Shen, Randy W. Heiland, Garth J. Simpson:
NLOPredict: Visualization and data analysis software for nonlinear optics. J. Comput. Chem. 28(12): 1996-2002 (2007) - [j2]Xiao Dong, Kevin E. Gilbert, Rajarshi Guha, Randy W. Heiland, Jungkee Kim, Marlon E. Pierce, Geoffrey Charles Fox, David J. Wild:
Web Service Infrastructure for Chemoinformatics. J. Chem. Inf. Model. 47(4): 1303-1307 (2007) - 2005
- [j1]Jessica Dantzer, Charles W. Moad, Randy W. Heiland, Sean D. Mooney:
MutDB services: interactive structural analysis of mutation data. Nucleic Acids Res. 33(Web-Server-Issue): 311-314 (2005) - 2001
- [c2]Randy W. Heiland, M. Pauline Baker, Danesh K. Tafti:
VisBench: A Framework for Remote Data Visualization and Analysis. International Conference on Computational Science (2) 2001: 718-727
1990 – 1999
- 1999
- [c1]Randy W. Heiland, M. Pauline Baker:
A Survey of Visualization Tools for High Performance Computing. PP 1999
Coauthor Index
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