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2020 – today
- 2024
[i6]Nikola Milosevic, Gesine Müller, Jan Huisken, Nico Scherf:
Open Problem: Active Representation Learning. CoRR abs/2406.03845 (2024)- [i5]Charlotte Beylier, Simon M. Hofmann, Nico Scherf:
Revealing the learning process in reinforcement learning agents through attention-oriented metrics. CoRR abs/2406.14324 (2024) - [i4]Nikola Milosevic, Johannes Müller, Nico Scherf:
Embedding Safety into RL: A New Take on Trust Region Methods. CoRR abs/2411.02957 (2024) - 2021
- [j6]Johannes Waschke
, Mario Hlawitschka, Kerim Anlas, Vikas Trivedi, Ingo Roeder, Jan Huisken, Nico Scherf:
linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser. PLoS Comput. Biol. 17(11) (2021) - [i3]Elena Williams, Sebastian Niehaus, Janis Reinelt, Alberto Merola, Paul Glad Mihai, Ingo Roeder, Nico Scherf, Maria del C. Valdés Hernández:
Quality control for more reliable integration of deep learning-based image segmentation into medical workflows. CoRR abs/2112.03277 (2021) - 2020
- [c14]Patryk Burek, Nico Scherf, Heinrich Herre:
On the Formal Representation and Annotation of Cellular Genealogies. EKAW 2020: 194-203 - [c13]Patryk Burek, Heinrich Herre, Nico Scherf:
On the Ontological Foundations of Cellular Development. JOWO 2020 - [i2]Nastassya Horlava, Alisa Mironenko, Sebastian Niehaus, Sebastian Wagner, Ingo Roeder, Nico Scherf:
A comparative study of semi- and self-supervised semantic segmentation of biomedical microscopy data. CoRR abs/2011.08076 (2020)
2010 – 2019
- 2019
- [j5]Patryk Burek, Nico Scherf, Heinrich Herre:
Ontology patterns for the representation of quality changes of cells in time. J. Biomed. Semant. 10(1): 16:1-16:18 (2019) - [c12]Patryk Burek, Nico Scherf, Heinrich Herre:
Foundations of the Cell Tracking Ontology. JOWO 2019 - [c11]Patryk Burek, Nico Scherf, Heinrich Herre:
A pattern-based approach to a cell tracking ontology. KES 2019: 784-793 - [i1]Marie Kloenne, Sebastian Niehaus, Leonie Lampe, Alberto Merola, Janis Reinelt, Nico Scherf:
Convolutional neural network stacking for medical image segmentation in CT scans. CoRR abs/1907.10132 (2019) - 2018
- [j4]Markus Morawski, Evgeniya Kirilina, Nico Scherf, Carsten Jäger, Katja Reimann, Robert Trampel, Filippos Gavriilidis, Stefan Geyer, Bernd Biedermann, Thomas Arendt, Nikolaus Weiskopf:
Developing 3D microscopy with CLARITY on human brain tissue: Towards a tool for informing and validating MRI-based histology. NeuroImage 182: 417-428 (2018) - [c10]Konstantin Thierbach, Pierre-Louis Bazin, Walter de Back, Filippos Gavriilidis, Evgeniya Kirilina, Carsten Jäger, Markus Morawski, Stefan Geyer, Nikolaus Weiskopf, Nico Scherf:
Combining Deep Learning and Active Contours Opens The Way to Robust, Automated Analysis of Brain Cytoarchitectonics. MLMI@MICCAI 2018: 179-187 - 2017
- [j3]Robert Bensch, Nico Scherf, Jan Huisken, Thomas Brox, Olaf Ronneberger:
Spatiotemporal Deformable Prototypes for Motion Anomaly Detection. Int. J. Comput. Vis. 122(3): 502-523 (2017) - 2016
- [c9]Konstantin Thierbach, Gopi Shah, Ingmar Glauche, Jan Huisken, Ingo Roeder, Nico Scherf:
Biology-inspired visualization of morphogenetic motion in the zebrafish endoderm. ISBI 2016: 925-929 - 2015
- [j2]Theresa Niederberger, Henrik Failmezger, Diana Uskat, Don Poron, Ingmar Glauche, Nico Scherf, Ingo Roeder, Timm Schroeder, Achim Tresch:
Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions. Bioinform. 31(11): 1816-1823 (2015) - 2014
- [c8]Tim Becker, W. Kanje, Daniel H. Rapoport, Konstantin Thierbach, Nico Scherf, Ingo Roeder, Amir Madany Mamlouk:
The benchmark data SET CeTReS.B-MI for in vitro mitosis detection. ISBI 2014: 469-472 - 2013
- [b1]Nico Scherf:
Panta Rhei: analysing the patterns of cellular organisation from time-lapse microscopy data. Dresden University of Technology, 2013, pp. 1-225 - [c7]Nico Scherf, Michael Kunze, Konstantin Thierbach, Thomas Zerjatke, Patryk Burek, Heinrich Herre, Ingmar Glauche, Ingo Roeder:
Assisting the Machine Paradigms for Human-Machine Interaction in Single Cell Tracking. Bildverarbeitung für die Medizin 2013: 116-121 - [c6]Nico Scherf, Thomas Zerjatke, K. Klemm, Ingmar Glauche, Ingo Roeder:
Beyond genealogies: Mutual information of causal paths to analyse single cell tracking data. ISBI 2013: 440-443 - 2012
- [j1]Nico Scherf, Maria Herberg, Konstantin Thierbach, Thomas Zerjatke, Tuzer Kalkan, Peter Humphreys, Austin Smith, Ingmar Glauche, Ingo Roeder:
Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions. Bioinform. 28(18): 556-561 (2012) - [c5]Nico Scherf, Christian Ludborzs, Konstantin Thierbach, Jens-Peer Kuska, Ulf-Dietrich Braumann, Patrick Scheibe, Tilo Pompe, Ingmar Glauche, Ingo Roeder:
FluidTracks - Combining Nonlinear Image Registration and Active Contours for Cell Tracking. Bildverarbeitung für die Medizin 2012: 57-62
2000 – 2009
- 2009
- [c4]Nico Scherf, Jens-Peer Kuska, Ulf-Dietrich Braumann, Katja Franke, Tilo Pompe, Ingo Röder:
Spatio-temporal Analysis of Unstained Cells In-vitro. Bildverarbeitung für die Medizin 2009: 292-296 - 2008
- [c3]Nico Scherf, Jens-Peer Kuska, Claudia Heine, Ulf-Dietrich Braumann, Heike Franke:
Segmentation of Axonal Fibres in Tissue Slices. Bildverarbeitung für die Medizin 2008: 178-182 - 2006
- [c2]Ulf-Dietrich Braumann, Jens Einenkel, Lars-Christian Horn, Jens-Peer Kuska, Markus Löffler, Nico Scherf, Nicolas Wentzensen:
Registration of Histologic Colour Images of Different Staining. Bildverarbeitung für die Medizin 2006: 231-235 - [c1]Jens-Peer Kuska, Ulf-Dietrich Braumann, Nico Scherf, Markus Löffler, Jens Einenkel, Michael Höckel, Lars-Christian Horn, Nicolas Wentzensen, Magnus von Knebel Doeberitz:
Image Registration of Differently Stained Histological Sections. ICIP 2006: 333-336
Coauthor Index
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