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Leyla Jael Castro

Leyla J. García – Leyla Jael García Castro

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affiliation: ZB MED - Information Centre for Life Sciences, Cologne, Germany
affiliation: European Bioinformatics Institute (EMBL-EBI), Hinxton, UK

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2020 – today

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2024
[i12]
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Styliani-Christina Fragkouli, Dhwani Solanki, Leyla Jael Castro, Fotis E. Psomopoulos, Núria Queralt-Rosinach, Davide Cirillo, Lisa C. Crossman:
Synthetic data: How could it be used for infectious disease research? CoRR abs/2407.06211 (2024)
2023
[j23]
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Caterina Caracciolo, Sophie Aubin, Clément Jonquet, Emna Amdouni, Romain David, Leyla J. García, Brandon Whitehead, Catherine Roussey, Armando Stellato, Ferdinando Villa:
Correction: 39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. Data Sci. J. 22 (2023)
[j22]
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Mingfang Wu, Stephen M. Richard, Chantelle Verhey, Leyla Jael Castro, Baptiste Cecconi, Nick S. Juty:
An Analysis of Crosswalks from Research Data Schemas to Schema.org. Data Intell. 5(1): 100-121 (2023)
[j21]
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Leyla Jael Castro, Patricia M. Palagi, Niall Beard, Teresa K. Attwood, Michelle D. Brazas:
Bioschemas training profiles: A set of specifications for standardizing training information to facilitate the discovery of training programs and resources. PLoS Comput. Biol. 19(6) (2023)
[c40]
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Zeyd Boukhers, Leyla Jael Castro:
Enhancing Reproducibility in Research Through FAIR Digital Objects. CoRDI 2023
[c39]
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Leyla Jael Castro, Juliane Fluck, Daniel Arend, Matthias Lange, Daniel Martini, Steffen Neumann, Sonja Schimmler, Dietrich Rebholz-Schuhmann:
Schema.org as a Lightweight Harmonization Approach for NFDI. CoRDI 2023
[c38]
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Leyla Jael Castro, Stian Soiland-Reyes, Dietrich Rebholz-Schuhmann:
RO-Crates Meets FAIR Digital Objects. CoRDI 2023
[c37]
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Olga L. Giraldo, Danilo Dessì, Stefan Dietze, Dietrich Rebholz-Schuhmann, Leyla Jael Castro:
Machine-Actionable Metadata for Software and Software Management Plans for NFDI. CoRDI 2023
[c36]
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Steffen Neumann, Felix Bach, Leyla Jael Castro, Tillmann Fischer, Stefan Hofmann, Pei-Chi Huang, Nicole Jung, Bhavin Katabathuni, Fabian Mauz, René Meier, Venkata Chandrasekhar Nainala, Noura Rayya, Christoph Steinbeck, Oliver Koepler:
Harmonising, Harvesting, and Searching Metadata Across a Repository Federation. CoRDI 2023
[c35]
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Leyla Jael Castro, Dietrich Rebholz-Schuhmann, Danilo Dessì, Jens Dierkes, Sonja Schimmler:
DaMaLOS 2023 Editorial Note. DaMaLOS 2023
[c34]
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Leyla Jael Castro, Dietrich Rebholz-Schuhmann, Nelson Quiñones, Dimitrios Bampalikis, Olga L. Giraldo, Eva Martin Del Pico, Allegra Via, Dhwani Solanki, Lukas Geist, Fotis E. Psomopoulos, Renato Alves, José María Fernández González:
A metadata schema for machine-actionable Software Management Plans. DaMaLOS 2023
[c33]
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Rohitha Ravinder, Tim Fellerhoff, Vishnu Dadi, Lukas Geist, Guillermo Rocamora, Muhammad Talha, Dietrich Rebholz-Schuhmann, Leyla Jael Castro:
A Comparison of Vector-based Approaches for Document Similarity Using the RELISH Corpus. SeWeBMeDA@ESWC 2023
[c32]
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Saurav Karmakar, Matthäus Zloch, Fidan Limani, Benjamin Zapilko, Sharmila Upadhyaya, Jennifer D'Souza, Leyla Jael Castro, Georg Rehm, Marcel R. Ackermann, Harald Sack, Zeyd Boukhers, Sonja Schimmler, Danilo Dessì, Peter Mutschke, Stefan Dietze:
Research Knowledge Graphs in NFDI4DS. GI-Jahrestagung 2023: 909-918
[c31]
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Sonja Schimmler, Bianca Wentzel, Arnim Bleier, Stefan Dietze, Saurav Karmakar, Peter Mutschke, Angelie Kraft, Tilahun Abedissa Taffa, Ricardo Usbeck, Zeyd Boukhers, Sören Auer, Leyla Jael Castro, Marcel R. Ackermann, Thomas Neumuth, Daniel Schneider, Ziawasch Abedjan, Atif Latif, Fidan Limani, Raia Abu Ahmad, Georg Rehm, Sima Attar Khorasani, Matthias Lieber:
NFDI4DS Infrastructure and Services. GI-Jahrestagung 2023: 919-924
[c30]
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Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Patrick Lambrix, Huanyu Li, Ying Li, Pierre Monnin, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou:
Results of the Ontology Alignment Evaluation Initiative 2023. OM@ISWC 2023: 97-139
[c29]
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Olga L. Giraldo, María Fernanda Cadena, Andrea Robayo-Gama, Dhwani Solanki, Tim Fellerhoff, Lukas Geist, Rohitha Ravinder, Muhammad Talha, Dietrich Rebholz-Schuhmann, Leyla Jael Castro:
Document-to-document relevance assessment for TREC Genomics Track 2005. SWAT4HCLS 2023: 98-101
[c28]
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Rohitha Ravinder, Leyla Jael Castro, Martin Hofmann-Apitius, Dietrich Rebholz-Schuhmann:
Comparative analysis of protein function text-based embeddings and their applicability to prediction tasks. SWAT4HCLS 2023: 124-125
[c27]
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Olga L. Giraldo, Renato Alves, Dimitrios Bampalikis, José M. Fernández, Eva Martin Del Pico, Fotis E. Psomopoulos, Nelson Quiñones, Dhwani Solanki, Allegra Via, Leyla Jael Castro:
A metadata analysis for machine-actionable Software Management Plans. SWAT4HCLS 2023: 145-146
[c26]
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Nelson Quiñones, Cesar Canales, Javier Torres, Dietrich Rebholz-Schuhmann, Leyla Jael Castro, Andrés Aristizábal:
Multilabel-classification task for Medline abstracts. SWAT4HCLS 2023: 155-156
[c25]
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Rohitha Ravinder, Tim Fellerhoff, Vishnu Dadi, Lukas Geist, Guillermo Rocamora, Muhammad Talha, Dietrich Rebholz-Schuhmann, Leyla Jael Castro:
OntoClue, a framework to compare vector-based approaches for document relatedness using the RELISH corpus. SWAT4HCLS 2023: 159-160
[e5]
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Leyla Jael Castro, Danilo Dessì, Jens Dierkes, Dietrich Rebholz-Schuhmann, Sonja Schimmler:
3rd Workshop on Metadata and Research (objects) Management for Linked Open Science - DaMaLOS 2023, co-located with ESWC 2023, Hersonissos, Greece, May 29, 2023. 2023 [contents]
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Atsuko Yamaguchi, Andrea Splendiani, M. Scott Marshall, Chris Baker, Jerven T. Bolleman, Albert Burger, Leyla Jael Castro, Ole Eigenbrod, Sabine Österle, Martin Romacker, Andra Waagmeester:
14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), Basel, Switzerland, February 13-16, 2023. CEUR Workshop Proceedings 3415, CEUR-WS.org 2023 [contents]
[i11]
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  - journals/corr/abs-2310-03859
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Philipp Schaer, Johann Schaible, Leyla Jael Castro:
Living Lab Evaluation for Life and Social Sciences Search Platforms - LiLAS at CLEF 2021. CoRR abs/2310.03859 (2023)
[i10]
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  - journals/corr/abs-2310-20387
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Philipp Schaer, Johann Schaible, Leyla Jael García Castro:
Overview of LiLAS 2020 - Living Labs for Academic Search. CoRR abs/2310.20387 (2023)
[i9]
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  - journals/corr/abs-2311-11457
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Florian Goth, Renato Alves, Matthias Braun, Leyla Jael Castro, Gerasimos Chourdakis, Simon Christ, Jeremy Cohen, Fredo Erxleben, Jean-Noël Grad, Magnus Hagdorn, Toby Hodges, Guido Juckeland, Dominic Kempf, Anna-Lena Lamprecht, Jan Linxweiler, Moritz Schwarzmeier, Heidi Seibold, Jan Philipp Thiele, Harald von Waldow, Samantha Wittke:
Foundational Competencies and Responsibilities of a Research Software Engineer. CoRR abs/2311.11457 (2023)
2022
[j20]
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Bernd Müller, Leyla Jael Castro, Dietrich Rebholz-Schuhmann:
Ontology-based identification and prioritization of candidate drugs for epilepsy from literature. J. Biomed. Semant. 13(1): 3 (2022)
[j19]
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João Cardoso, Leyla Jael Castro, Fajar J. Ekaputra, Marie C. Jacquemot, Marek Suchánek, Tomasz Miksa, José Borbinha:
DCSO: towards an ontology for machine-actionable data management plans. J. Biomed. Semant. 13(1): 21 (2022)
[j18]
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Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, José María Fernández, Daniel Garijo, Björn A. Grüning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole A. Goble:
Packaging research artefacts with RO-Crate. Data Sci. 5(2): 97-138 (2022)
[c24]
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Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Ernesto Jiménez-Ruiz, Naouel Karam, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Franck Michel, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Cássia Trojahn, Chantelle Verhey, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou:
Results of the Ontology Alignment Evaluation Initiative 2022. OM@ISWC 2022: 84-128
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Katy Wolstencroft, Andrea Splendiani, M. Scott Marshall, Chris Baker, Andra Waagmeester, Marco Roos, Rutger A. Vos, Rianne Fijten, Leyla Jael Castro:
13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, SWAT4HCLS 2022, Virtual Event, Leiden, The Netherlands, January 10th to 14th, 2022. CEUR Workshop Proceedings 3127, CEUR-WS.org 2022 [contents]
[i8]
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Philipp Schaer, Timo Breuer, Leyla Jael Castro, Benjamin Wolff, Johann Schaible, Narges Tavakolpoursaleh:
Overview of LiLAS 2021 - Living Labs for Academic Search. CoRR abs/2203.05430 (2022)
[i7]
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Timo Breuer, Narges Tavakolpoursaleh, Johann Schaible, Daniel Hienert, Philipp Schaer, Leyla Jael Castro:
Online Information Retrieval Evaluation using the STELLA Framework. CoRR abs/2210.13202 (2022)
2021
[j17]
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Alex Bateman, Maria Jesus Martin, Sandra E. Orchard, Michele Magrane, Rahat Agivetova, Shadab Ahmad, Emanuele Alpi, Emily H. Bowler-Barnett, Ramona Britto, Borisas Bursteinas, Hema Bye-A-Jee, Ray Coetzee, Austra Cukura, Alan W. Sousa da Silva, Paul Denny, Tunca Dogan, Thankgod Ebenezer, Jun Fan, Leyla Jael García Castro, Penelope Garmiri, George E. Georghiou, Leonardo Gonzales, Emma Hatton-Ellis, Abdulrahman Hussein, Alexandr Ignatchenko, Giuseppe Insana, Rizwan Ishtiaq, Petteri Jokinen, Vishal Joshi, Dushyanth Jyothi, Antonia Lock, Rodrigo Lopez, Aurelien Luciani, Jie Luo, Yvonne Lussi, Alistair MacDougall, Fábio Madeira, Mahdi Mahmoudy, Manuela Menchi, Alok Mishra, Katie Moulang, Andrew Nightingale, Carla Susana Oliveira, Sangya Pundir, Guoying Qi, Shriya Raj, Daniel Rice, Milagros Rodríguez-López, Rabie Saidi, Joseph Sampson, Tony Sawford, Elena Speretta, Edward Turner, Nidhi Tyagi, Preethi Vasudev, Vladimir Volynkin, Kate Warner, Xavier Watkins, Rossana Zaru, Hermann Zellner, Alan J. Bridge, Sylvain Poux, Nicole Redaschi, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen, Parit Bansal, Delphine Baratin, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet, Lionel Breuza, Cristina Casals-Casas, Edouard De Castro, Kamal Chikh Echioukh, Elisabeth Coudert, Béatrice A. Cuche, Mikael Doche, Dolnide Dornevil, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Elisabeth Gasteiger, Sebastien Gehant, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Guillaume Keller, Arnaud Kerhornou, Vicente Lara, Philippe Le Mercier, Damien Lieberherr, Thierry Lombardot, Xavier Martin, Patrick Masson, Anne Morgat, Teresa Batista Neto, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Lucille Pourcel, Monica Pozzato, Manuela Pruess, Catherine Rivoire, Christian J. A. Sigrist, Karin Sonesson, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Laure Verbregue, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, John S. Garavelli, Hongzhan Huang, Kati Laiho, Peter B. McGarvey, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang, Yuqi Wang, Lai-Su Yeh, Jian Zhang, Patrick Ruch, Douglas Teodoro:
UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res. 49(Database-Issue): D480-D489 (2021)
[c23]
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Philipp Schaer, Timo Breuer, Leyla Jael Castro, Benjamin Wolff, Johann Schaible, Narges Tavakolpoursaleh:
Overview of LiLAS 2021 - Living Labs for Academic Search. CLEF 2021: 394-418
[c22]
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Philipp Schaer, Timo Breuer, Leyla Jael Castro, Benjamin Wolff, Johann Schaible, Narges Tavakolpoursaleh:
Overview of LiLAS 2021 - Living Labs for Academic Search (Extended Overview). CLEF (Working Notes) 2021: 1668-1699
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Daniel S. Katz, Fotis E. Psomopoulos, Leyla Jael Castro:
Working Towards Understanding the Role of FAIR for Machine Learning. DaMaLOS 2021: 1-6
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Philipp Schaer, Johann Schaible, Leyla Jael Castro:
Living Lab Evaluation for Life and Social Sciences Search Platforms - LiLAS at CLEF 2021. ECIR (2) 2021: 657-664
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Ashley Ritchie, Jiaoyan Chen, Leyla Jael Castro, Dietrich Rebholz-Schuhmann, Ernesto Jiménez-Ruiz:
Ontology Clustering with OWL2Vec. DeepOntoNLP/X-SENTIMENT@ESWC 2021: 54-61
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Leyla Jael Castro, Markus Stocker, Dietrich Rebholz-Schuhmann:
DaMaLOS - Second Workshop on Data and Research Objects Management for Linked Open Science, Co-located at the International Semantic Web Conference ISWC 2021, Virtual Conference, October 24, 2021. 2021 [contents]
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Ashley Ritchie, Jiaoyan Chen, Leyla Jael Castro, Dietrich Rebholz-Schuhmann, Ernesto Jiménez-Ruiz:
Embeddings of Gene Ontology (GO) using OWL2Vec. Zenodo, 2021
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Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, José María Fernández, Daniel Garijo, Björn A. Grüning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole A. Goble:
Packaging research artefacts with RO-Crate. CoRR abs/2108.06503 (2021)
2020
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Robel Y. Kahsay, Jeet Vora, Rahi Navelkar, Reza Mousavi, Brian C. Fochtman, Xavier Holmes, Nagarajan Pattabiraman, René Ranzinger, Rupali Mahadik, Tatiana Williamson, Sujeet Kulkarni, Gaurav Agarwal, Maria Jesus Martin, Preethi Vasudev, Leyla J. García, Nathan Edwards, Wenjin Zhang, Darren A. Natale, Karen Ross, Kiyoko F. Aoki-Kinoshita, Matthew P. Campbell, William S. York, Raja Mazumder:
GlyGen data model and processing workflow. Bioinform. 36(12): 3941-3943 (2020)
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Anna-Lena Lamprecht, Leyla J. García, Mateusz Kuzak, Carlos Martinez-Ortiz, Ricardo Arcila, Eva Martin Del Pico, Victoria Dominguez Del Angel, Stephanie van de Sandt, Jon C. Ison, Paula Andrea Martínez, Peter McQuilton, Alfonso Valencia, Jennifer L. Harrow, Fotis E. Psomopoulos, Josep Lluis Gelpí, Neil P. Chue Hong, Carole A. Goble, Salvador Capella-Gutiérrez:
Towards FAIR principles for research software. Data Sci. 3(1): 37-59 (2020)
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Caterina Caracciolo, Sophie Aubin, Clément Jonquet, Emna Amdouni, Romain David, Leyla J. García, Brandon Whitehead, Catherine Roussey, Armando Stellato, Ferdinando Villa:
39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. Data Sci. J. 19: 47 (2020)
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Leyla J. García, Erick Antezana, Alexander García Castro, Evan Bolton, Rafael C. Jiménez, Pjotr Prins, Juan M. Banda, Toshiaki Katayama:
Ten simple rules to run a successful BioHackathon. PLoS Comput. Biol. 16(5) (2020)
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Leyla J. García, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis E. Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Dominguez Del Angel, Michel Dumontier, Kim T. Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah L. Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia W. G. van Gelder, Patricia M. Palagi:
Ten simple rules for making training materials FAIR. PLoS Comput. Biol. 16(5) (2020)
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Philipp Schaer, Johann Schaible, Leyla Jael García Castro:
Overview of LiLAS 2020 - Living Labs for Academic Search. CLEF 2020: 364-371
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Philipp Schaer, Johann Schaible, Leyla Jael García Castro:
Overview of LiLAS 2020 - Living Labs for Academic Search Workshop Lab (extended abstract). CLEF (Working Notes) 2020
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João Cardoso, Leyla J. García, Fajar J. Ekaputra, Marie C. Jacquemot, Tomasz Miksa, José Borbinha:
Towards semantic representation of machine-actionable Data Management Plans. DaMaLOS 2020: 1-9
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Leyla J. García, Michelle Barker, Neil P. Chue Hong, Fotis E. Psomopoulos, Jennifer L. Harrow, Daniel S. Katz, Mateusz Kuzak, Paula Andrea Martínez, Allegra Via:
Software as a first-class citizen in research. DaMaLOS 2020: 1-8
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Leyla Jael García Castro, Sören Auer, Maria-Esther Vidal, Dietrich Rebholz-Schuhmann:
DaMaLOS - First Workshop on Data and Research Objects Management for Linked Open Science, Co-located at the International Semantic Web Conference ISWC 2020, Virtual Conference, November 2-3, 2020. 2020 [contents]
[i5]
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Caterina Caracciolo, Sophie Aubin, Clément Jonquet, Emna Amdouni, Romain David, Leyla J. García, Brandon Whitehead, Catherine Roussey, Armando Stellato, Ferdinando Villa:
39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. CoRR abs/2012.08325 (2020)
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David Salgado, Irina M. Armean, Michael Baudis, Sergi Beltran, Salvador Capella-Gutiérrez, Denise Carvalho-Silva, Victoria Dominguez Del Angel, Joaquín Dopazo, Laura I. Furlong, Bo Gao, Leyla Jael García Castro, Dietlind Gerloff, Ivo Gut, Attila Gyenesei, Nina Habermann, John M. Hancock, Marc Hanauer, Eivind Hovig, Lennart F. Johansson, Thomas Keane, Jan Korbel, Katharina B. Lauer, Steve Laurie, Brane Leskosek, David Lloyd, Tomàs Marquès-Bonet, Hailiang Mei, Katalin Monostory, Janet Piñero, Krzysztof Poterlowicz, Ana Rath, Pubudu Samarakoon, Ferran Sanz, Gary Saunders, Daoud Sie, Morris A. Swertz, Kirill Tsukanov, Alfonso Valencia, Marko Vidak, Cristina Yenyxe González, Bauke Ylstra, Christophe Béroud:
The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research. F1000Research 9: 1229 (2020)

2010 – 2019

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2019
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Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi:
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8: 1677 (2019)
2018
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Denise Carvalho-Silva, Leyla J. García, Sarah L. Morgan, Cath Brooksbank, Ian Dunham:
Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars. PLoS Comput. Biol. 14(11) (2018)
2017
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Leyla Jael Castro:
Biotea-Biolinks: A semantic infrastructure for exploring and analyzing scientific publications. Jaume I University, Spain, 2017
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Xavier Watkins, Leyla J. García, Sangya Pundir, Maria Jesus Martin, The UniProt Consortium:
ProtVista: visualization of protein sequence annotations. Bioinform. 33(13): 2040-2041 (2017)
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Leyla J. García, Olga L. Giraldo, Alexander García Castro, Michel Dumontier, Bioschemas Community:
Bioschemas: schema.org for the Life Sciences. SWAT4LS 2017
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Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutiérrez, Neil P. Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla J. García, Josep Lluis Gelpí, Simon L. Gladman, Carole A. Goble, Montserrat González Ferreiro, Alejandra N. González-Beltrán, Philippa C. Griffin, Björn A. Grüning, Jonas Hagberg, Petr Holub, Rob W. W. Hooft, Jon C. Ison, Daniel S. Katz, Brane Leskosek, Federico López-Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola J. Mulder, Yasset Pérez-Riverol, Robert Pergl, Horst Pichler, Bernard J. Pope, Ferran Sanz, Maria Victoria Schneider, Victoria Stodden, Radoslaw Suchecki, Radka Svobodová Vareková, Harry-Anton Talvik, Ilian T. Todorov, Andrew E. Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch:
Four simple recommendations to encourage best practices in research software. F1000Research 6: 876- (2017)
2016
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Leyla J. García, Leonardo Gonzales, Maria Jesus Martin:
A Graph-based Taxonomy RESTful Data Service. SWAT4LS 2016
2015
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Andrés García-Silva, Leyla Jael García Castro, Alexander García Castro, Óscar Corcho:
Building Domain Ontologies Out of Folksonomies and Linked Data. Int. J. Artif. Intell. Tools 24(2): 1540014:1-1540014:22 (2015)
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Leyla Jael García Castro, Rafael Berlanga Llavori, Alexander García Castro:
In the pursuit of a semantic similarity metric based on UMLS annotations for articles in PubMed Central Open Access. J. Biomed. Informatics 57: 204-218 (2015)
2014
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Simon Jupp, James Malone, Jerven T. Bolleman, Marco Brandizi, Mark Davies, Leyla J. García, Anna Gaulton, Sebastien Gehant, Camille Laibe, Nicole Redaschi, Sarala M. Wimalaratne, Maria Jesus Martin, Nicolas Le Novère, Helen E. Parkinson, Ewan Birney, Andrew M. Jenkinson:
The EBI RDF platform: linked open data for the life sciences. Bioinform. 30(9): 1338-1339 (2014)
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Andrés García-Silva, Leyla Jael García Castro, Alexander García Castro, Óscar Corcho:
Social Tags and Linked Data for Ontology Development: A Case Study in the Financial Domain. WIMS 2014: 32:1-32:10
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Manuel Corpas, Rafael C. Jiménez, Seth Carbon, Alexander García Castro, Leyla Jael Castro, Tatyana Goldberg, John Gómez, Alex Kalderimis, Suzanna E. Lewis, Ian Mulvany, Aleksandra Pawlik, Francis Rowland, Gustavo A. Salazar, Fabian Schreiber, Ian Sillitoe, William Spooner, Anil S. Thanki, Jose M. Villaveces, Guy Yachdav, Henning Hermjakob:
BioJS: an open source standard for biological visualisation - its status in 2014. F1000Research 3: 55 (2014)
2013
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John Gómez, Leyla J. García, Gustavo A. Salazar, Jose M. Villaveces, Swanand P. Gore, Alexander García Castro, Maria Jesus Martin, Guillaume Launay, Rafael Alcántara, Noemi del-Toro, Marine Dumousseau, Sandra E. Orchard, Sameer Velankar, Henning Hermjakob, Chenggong Zong, Peipei Ping, Manuel Corpas, Rafael C. Jiménez:
BioJS: an open source JavaScript framework for biological data visualization. Bioinform. 29(8): 1103-1104 (2013)
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Leyla Jael García Castro, Casey McLaughlin, Alexander García Castro:
Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data. J. Biomed. Semant. 4(S-1): S5 (2013)
[c11]
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Leyla Jael García Castro, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann, Alexander García Castro:
Connections across Scientific Publications based on Semantic Annotations. SePublica 2013: 51-62
2012
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Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro:
Using annotations to model discourse: an extension to the Annotation Ontology. SePublica@ESWC 2012: 13-22
[c9]
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Leyla Jael García Castro, Alexander García Castro, John Gómez:
Conceptual Exploration of Documents and Digital Libraries in the Biomedical Domain. SWAT4LS 2012
2011
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Jose M. Villaveces, Rafael C. Jiménez, Leyla J. García, Gustavo A. Salazar, Bernat Gel, Nicola J. Mulder, Maria Jesus Martin, Alexander García Castro, Henning Hermjakob:
Dasty3, a WEB framework for DAS. Bioinform. 27(18): 2616-2617 (2011)
[j3]
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Paolo Ciccarese, Marco Ocana, Leyla Jael García Castro, Sudeshna Das, Tim Clark:
An open annotation ontology for science on web 3.0. J. Biomed. Semant. 2(S-2): S4 (2011)
[c8]
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Alexander García Castro, Olga L. Giraldo, Leyla J. García:
Annotating Experimental Records Using Ontologies. ICBO 2011
[c7]
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Alexander García Castro, Leyla Jael García Castro:
A translational model for representing research articles. SWAT4LS 2011: 20-21
[c6]
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Leyla Jael García Castro, Alexander García Castro:
Tagsty: augmented knowledge from community-based annotations on protein sequences. SWAT4LS 2011: 22-23
2010
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Alexander García Castro, Alberto Labarga, Leyla J. García, Olga L. Giraldo, César Montaña, John A. Bateman:
Semantic Web and Social Web heading towards Living Documents in the Life Sciences. J. Web Semant. 8(2-3): 155-162 (2010)
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Leyla Jael García Castro, Martin Hepp, Alexander García Castro:
TagSorting: A Tagging Environment for Collaboratively Building Ontologies. EKAW 2010: 462-472
[c4]
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Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro:
Using the Annotation Ontology in Semantic Digital Libraries. ISWC (Posters & Demos) 2010
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Alexander García Castro, Kieran O'Neill, Leyla Jael García Castro, Phillip W. Lord, Robert Stevens, Óscar Corcho, Frank Gibson:
Developing Ontologies within Decentralised Settings. Semantic e-Science 2010: 99-139

2000 – 2009

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2009
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Alexander García Castro, Leyla Jael García Castro, Alberto Labarga, Olga L. Giraldo, César Montaña, Kieran O'Neill, John A. Bateman:
Annotating Atomic Components of Papers in Digital Libraries: The Semantic and Social Web Heading towards a Living Document Supporting eSciences. DEXA 2009: 287-301
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Leyla Jael García Castro, Martin Hepp, Alexander García Castro:
Tags4Tags: Using Tagging to Consolidate Tags. DEXA 2009: 619-628
2008
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Alexander García Castro, Angela Norena, Andres Betancourt, Leyla J. García:
CMAPS Supporting the Development of OWL Ontologies. ISWC (Posters & Demos) 2008
2005
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Alexander García Castro, Samuel Thoraval, Leyla J. García, Mark A. Ragan:
Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator. BMC Bioinform. 6: 87 (2005)

Coauthor Index

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