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2020 – today
- 2024
[i1]Christopher Irwin, Flavio Mignone, Stefania Montani, Luigi Portinale:
Graph Neural Networks for Gut Microbiome Metaomic data: A preliminary work. CoRR abs/2407.00142 (2024)
2010 – 2019
- 2018
- [j14]Igor Saggese, Elisa Bona, Maxwell Conway, Francesco Favero
, Marco Ladetto, Pietro Liò, Giovanni Manzini, Flavio Mignone:
STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow. BMC Bioinform. 19-S(7): 127-137 (2018) - 2013
- [j13]Ilenia Boria, Lara Boatti, Graziano Pesole, Flavio Mignone:
NGS-Trex: Next Generation Sequencing Transcriptome profile explorer. BMC Bioinform. 14(S-7): S10 (2013) - 2011
- [j12]Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole:
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Res. 39(Database-Issue): 80-85 (2011) - 2010
- [j11]Giorgio Grillo, Antonio Turi, Flavio Licciulli, Flavio Mignone, Sabino Liuni, Sandro Banfi, Vincenzo Alessandro Gennarino, David Stephen Horner, Giulio Pavesi, Ernesto Picardi, Graziano Pesole:
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 38(Database-Issue): 75-80 (2010)
2000 – 2009
- 2009
- [j10]Teresa Maria Creanza, David Stephen Horner, Annarita D'Addabbo, Rosalia Maglietta, Flavio Mignone, Nicola Ancona, Graziano Pesole:
Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements. BMC Bioinform. 10(S-6) (2009) - [j9]Ernesto Picardi, Flavio Mignone, Graziano Pesole:
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data. BMC Bioinform. 10(S-6) (2009) - 2008
- [j8]Tiziana Castrignanò, Mattia D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, Anna Maria D'Erchia, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Alberto Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole:
ASPicDB: A database resource for alternative splicing analysis. Bioinform. 24(10): 1300-1304 (2008) - [c1]Paolo D'Onorio De Meo, Danilo Carrabino, Mattia D'Antonio, Annarita D'Addabbo, Sabino Liuni, Flavio Mignone, Graziano Pesole, Nicola Ancona:
HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers. CCGRID 2008: 747-752 - 2007
- [j7]Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole:
A high performance grid-web service framework for the identification of 'conserved sequence tags'. Future Gener. Comput. Syst. 23(3): 371-381 (2007) - 2006
- [j6]Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole:
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags. Bioinform. 22(4): 497-499 (2006) - 2005
- [j5]Flavio Mignone, Giorgio Grillo, Flavio Licciulli, Michele Iacono, Sabino Liuni, Paul J. Kersey, Jorge Duarte, Cecilia Saccone, Graziano Pesole:
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 33(Database-Issue): 141-146 (2005) - [j4]Angelo Boccia, Mauro Petrillo, Diego di Bernardo, Alessandro Guffanti, Flavio Mignone, Stefano Confalonieri, Lucilla Luzi, Graziano Pesole, Giovanni Paolella, Andrea Ballabio, Sandro Banfi:
DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes. Nucleic Acids Res. 33(Database-Issue): 505-510 (2005) - 2004
- [j3]Flavio Mignone, David Stephen Horner, Graziano Pesole:
WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments. Bioinform. 20(8): 1331-1333 (2004) - [j2]Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole:
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. Nucleic Acids Res. 32(Web-Server-Issue): 624-627 (2004) - 2002
- [j1]Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Flavio Mignone, Carmela Gissi, Cecilia Saccone:
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. Nucleic Acids Res. 30(1): 335-340 (2002)
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