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2020 – today
- 2024
[j75]Zeyuan Chen
, Yuanjie Zheng, James C. Gee:
TransMatch: A Transformer-Based Multilevel Dual-Stream Feature Matching Network for Unsupervised Deformable Image Registration. IEEE Trans. Medical Imaging 43(1): 15-27 (2024)- [i21]Michael S. Yao, Yimeng Zeng, Hamsa Bastani, Jacob R. Gardner, James C. Gee, Osbert Bastani:
Generative Adversarial Bayesian Optimization for Surrogate Objectives. CoRR abs/2402.06532 (2024) - [i20]Yifan Wu, Yang Liu, Yue Yang, Michael S. Yao, Wenli Yang, Xuehui Shi, Lihong Yang, Dongjun Li, Yueming Liu, James C. Gee, Xuan Yang, Wenbin Wei, Shi Gu:
A Concept-based Interpretable Model for the Diagnosis of Choroid Neoplasias using Multimodal Data. CoRR abs/2403.05606 (2024) - [i19]Rohit Jena, Pratik Chaudhari, James C. Gee:
FireANTs: Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration. CoRR abs/2404.01249 (2024) - [i18]Yifan Wu, Mengjin Dong, Rohit Jena, Chen Qin, James C. Gee:
Neural Ordinary Differential Equation based Sequential Image Registration for Dynamic Characterization. CoRR abs/2404.02106 (2024) - [i17]Yue Yang, Mona Gandhi, Yufei Wang, Yifan Wu, Michael S. Yao, Chris Callison-Burch, James C. Gee, Mark Yatskar:
A Textbook Remedy for Domain Shifts: Knowledge Priors for Medical Image Analysis. CoRR abs/2405.14839 (2024) - [i16]Rohit Jena, Pratik Chaudhari, James C. Gee:
Deep Implicit Optimization for Robust and Flexible Image Registration. CoRR abs/2406.07361 (2024) - [i15]Rohit Jena, Deeksha Sethi, Pratik Chaudhari, James C. Gee:
Deep Learning in Medical Image Registration: Magic or Mirage? CoRR abs/2408.05839 (2024) - [i14]Michael S. Yao, Allison Chae, Charles E. Kahn Jr., Walter R. Witschey, James C. Gee, Hersh Sagreiya, Osbert Bastani:
Evidence Is All You Need: Ordering Imaging Studies via Language Model Alignment with the ACR Appropriateness Criteria. CoRR abs/2409.19177 (2024) - 2023
- [c160]Rohit Jena, Lukas Zhornyak, Nehal Doiphode, Pratik Chaudhari, Vivek Buch, James C. Gee, Jianbo Shi:
Beyond mAP: Towards Better Evaluation of Instance Segmentation. CVPR 2023: 11309-11318 - [c159]Michael S. Yao, Allison Chae, Matthew T. MacLean, Anurag Verma, Jeffrey T. Duda, James C. Gee, Drew A. Torigian, Daniel J. Rader, Charles E. Kahn, Walter R. Witschey, Hersh Sagreiya:
SynthA1c: Towards Clinically Interpretable Patient Representations for Diabetes Risk Stratification. PRIME@MICCAI 2023: 46-57 - [c158]Hyung S. Roh, David J. Irwin, Mónica Muñoz López, Maria Mercedes Iñiguez de Onzoño Martin, Ranjit Ittyerah, Sydney Lim, Madigan L. Bedard, John L. Robinson, Theresa Schuck, Emilio Artacho-Pérula, María del Mar Arroyo Jiménez, Maria del Pilar Marcos Rabal, Francisco Javier Molina Romero, Sandra Cebada Sánchez, José Carlos Delgado González, Carlos de la Rosa-Prieto, Marta Córcoles Parada, Edward B. Lee, Daniel T. Ohm, Laura E. M. Wisse, David A. Wolk, James C. Gee, Ricardo Insausti, Paul A. Yushkevich, Min Chen:
Integrating color deconvolution thresholding and weakly supervised learning for automated segmentation of neurofibrillary tangle and neuropil threads. Digital and Computational Pathology 2023 - [i13]Rohit Jena, Pratik Chaudhari, James C. Gee, Ganesh Subramanian Iyer, Siddharth Choudhary, Brandon M. Smith:
Mesh Strikes Back: Fast and Efficient Human Reconstruction from RGB videos. CoRR abs/2303.08808 (2023) - [i12]Huzheng Yang, Jianbo Shi, James C. Gee:
Retinotopy Inspired Brain Encoding Model and the All-for-One Training Recipe. CoRR abs/2307.14021 (2023) - [i11]Huzheng Yang, James C. Gee, Jianbo Shi:
Memory Encoding Model. CoRR abs/2308.01175 (2023) - [i10]Yifan Wu, Pengchuan Zhang, Wenhan Xiong, Barlas Oguz, James C. Gee, Yixin Nie:
The Role of Chain-of-Thought in Complex Vision-Language Reasoning Task. CoRR abs/2311.09193 (2023) - [i9]Rohit Jena, Ganesh Subramanian Iyer, Siddharth Choudhary, Brandon M. Smith, Pratik Chaudhari, James C. Gee:
SplatArmor: Articulated Gaussian splatting for animatable humans from monocular RGB videos. CoRR abs/2311.10812 (2023) - [i8]Huzheng Yang, James C. Gee, Jianbo Shi:
Brain Decodes Deep Nets. CoRR abs/2312.01280 (2023) - [i7]Yifan Wu, Rohit Jena, Mehmet A. Gülsün, Vivek K. Singh, Puneet Sharma, James C. Gee:
Towards Establishing Dense Correspondence on Multiview Coronary Angiography: From Point-to-Point to Curve-to-Curve Query Matching. CoRR abs/2312.11593 (2023) - 2022
- [c157]Yifan Wu, Tom Z. Jiahao, Jiancong Wang, Paul A. Yushkevich, M. Ani Hsieh, James C. Gee:
NODEO: A Neural Ordinary Differential Equation Based Optimization Framework for Deformable Image Registration. CVPR 2022: 20772-20781 - [i6]Rohit Jena, Lukas Zhornyak, Nehal Doiphode, Vivek Buch, James C. Gee, Jianbo Shi:
Beyond mAP: Re-evaluating and Improving Performance in Instance Segmentation with Semantic Sorting and Contrastive Flow. CoRR abs/2207.01614 (2022) - [i5]Michael S. Yao, Allison Chae, Matthew T. MacLean, Anurag Verma, Jeffrey T. Duda, James C. Gee, Drew A. Torigian, Daniel J. Rader, Charles E. Kahn, Walter R. Witschey, Hersh Sagreiya:
Learning-Based Radiomic Prediction of Type 2 Diabetes Mellitus Using Image-Derived Phenotypes. CoRR abs/2209.10043 (2022) - 2021
- [j74]Jeffrey D. Rudie, Jeffrey T. Duda, Michael Tran Duong, Po-Hao Chen, Long Xie, Robert Kurtz, Jeffrey B. Ware, Joshua Choi, Raghav R. Mattay, Emmanuel J. Botzolakis, James C. Gee, R. Nick Bryan, Tessa Sundaram Cook, Suyash Mohan, Ilya M. Nasrallah, Andreas M. Rauschecker:
Brain MRI Deep Learning and Bayesian Inference System Augments Radiology Resident Performance. J. Digit. Imaging 34(4): 1049-1058 (2021) - [i4]Yifan Wu, Tom Z. Jiahao, Jiancong Wang, Paul A. Yushkevich, James C. Gee, M. Ani Hsieh:
Deformable Image Registration using Neural ODEs. CoRR abs/2108.03443 (2021) - 2020
- [c156]Lingzhi Zhang, Jiancong Wang, Yinshuang Xu, Jie Min, Tarmily Wen, James C. Gee, Jianbo Shi:
Nested Scale-Editing for Conditional Image Synthesis. CVPR 2020: 5476-5486 - [c155]Heng Jin, Jessica I. W. Morgan, James C. Gee, Min Chen:
Spatially Informed CNN for Automated Cone Detection in Adaptive Optics Retinal Images. ISBI 2020: 1383-1386 - [c154]Alison M. Pouch, Paul A. Yushkevich, Abdullah H. Aly, Alexander H. F. Woltersom, Edidiong Okon, Ahmed H. Aly, Natalie Yushkevich, Shobhana Parameshwaran, Jiancong Wang, Baris U. Oguz, James C. Gee, Ipek Oguz, Nadav Schwartz:
Automated Meshing of Anatomical Shapes for Deformable Medial Modeling: Application to the Placenta in 3D Ultrasound. ISBI 2020: 1842-1846 - [c153]Yifan Wu, Jiancong Wang, William Lindsay, Tarmily Wen, Jianbo Shi, James C. Gee:
Interpretable Identification of Interstitial Lung Disease (ILD) Associated Findings from CT. MICCAI (6) 2020: 560-569 - [c152]Jiancong Wang, Yuhua Chen, Yifan Wu, Jianbo Shi, James C. Gee:
Enhanced generative adversarial network for 3D brain MRI super-resolution. WACV 2020: 3616-3625 - [i3]Lingzhi Zhang, Jiancong Wang, Yinshuang Xu, Jie Min, Tarmily Wen, James C. Gee, Jianbo Shi:
Nested Scale Editing for Conditional Image Synthesis. CoRR abs/2006.02038 (2020)
2010 – 2019
- 2019
- [j73]Yumeng Guo, Fulai Chung, Guozheng Li, Jiancong Wang, James C. Gee:
Leveraging Label-Specific Discriminant Mapping Features for Multi-Label Learning. ACM Trans. Knowl. Discov. Data 13(2): 24:1-24:23 (2019) - [c151]Zelu Deng, Jianbin Gao, Tao Huang, James C. Gee:
Combining Cross Entropy Loss with Manually Defined Hard Example for Semantic Image Segmentation. ICIG (1) 2019: 32-43 - [c150]Jianbin Gao, Huan Tang, James C. Gee:
Hybird Single-Multiple Frame Super-Resolution Reconstruction of Video Face Image. ICIG (1) 2019: 773-784 - [c149]Min Chen, James C. Gee, Jessica I. W. Morgan, Geoffrey Karl Aguirre:
Shape Decomposition of Foveal Pit Morphology Using Scan Geometry Corrected OCT. OMIA@MICCAI 2019: 69-76 - [c148]Huzheng Yang, Xiaoxiao Li, Yifan Wu, Siyi Li, Su Lu, James S. Duncan, James C. Gee, Shi Gu:
Interpretable Multimodality Embedding of Cerebral Cortex Using Attention Graph Network for Identifying Bipolar Disorder. MICCAI (3) 2019: 799-807 - [e3]Albert C. S. Chung, James C. Gee, Paul A. Yushkevich, Siqi Bao:
Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Hong Kong, China, June 2-7, 2019, Proceedings. Lecture Notes in Computer Science 11492, Springer 2019, ISBN 978-3-030-20350-4 [contents] - [i2]Jiancong Wang, Long Xie, Paul A. Yushkevich, James C. Gee:
Barnes-Hut Approximation for Point SetGeodesic Shooting. CoRR abs/1907.04834 (2019) - [i1]Jiancong Wang, Yuhua Chen, Yifan Wu, Jianbo Shi, James C. Gee:
Enhanced generative adversarial network for 3D brain MRI super-resolution. CoRR abs/1907.04835 (2019) - 2018
- [j72]Emmanuel Boateng Sifah, Qi Xia, Kwame Opuni-Boachie Obour Agyekum, Sandro Amofa, Jianbin Gao, Ruidong Chen, Hu Xia, James C. Gee, Xiaojiang Du, Mohsen Guizani:
Chain-based big data access control infrastructure. J. Supercomput. 74(10): 4945-4964 (2018) - [c147]Sandro Amofa, Emmanuel Boateng Sifah, Kwame Opuni-Boachie Obour Agyekum, Abla Smahi, Qi Xia, James C. Gee, Jianbin Gao:
A Blockchain-based Architecture Framework for Secure Sharing of Personal Health Data. HealthCom 2018: 1-6 - [c146]Emelia Opoku Aboagye, James C. Gee, Jianbin Gao, Rajesh Kumar, Riaz Ullah Khan:
Probabilistic Time Context Framework for Big Data Collaborative Recommendation. ICCAI 2018: 118-121 - [c145]Kwame Opuni-Boachie Obour Agyekum, Qi Xia, Emmanuel Boateng Sifah, Sandro Amofa, Kingsley Nketia Acheampong, Jianbin Gao, Ruidong Chen, Hu Xia, James C. Gee, Xiaojiang Du, Mohsen Guizani:
V-Chain: A Blockchain-Based Car Lease Platform. iThings/GreenCom/CPSCom/SmartData 2018: 1317-1325 - [c144]Baris U. Oguz, Jiancong Wang, Natalie Yushkevich, Alison M. Pouch, James C. Gee, Paul A. Yushkevich, Nadav Schwartz, Ipek Oguz:
Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS. DATRA/PIPPI@MICCAI 2018: 138-148 - [c143]William Lindsay, Jiancong Wang, Nicholas Sachs, Eduardo Barbosa, James C. Gee:
Transfer Learning Approach to Predict Biopsy-Confirmed Malignancy of Lung Nodules from Imaging Data: A Pilot Study. RAMBO+BIA+TIA@MICCAI 2018: 295-301 - [c142]Min Chen, James C. Gee, Jerry L. Prince, Geoffrey Karl Aguirre:
2D Modeling and Correction of Fan-Beam Scan Geometry in OCT. COMPAY/OMIA@MICCAI 2018: 328-335 - 2017
- [j71]Eduardo Barbosa Jr., Scott Simpson, James C. Lee, Nicholas J. Tustison, James C. Gee, Haochang Shou:
Multivariate modeling using quantitative CT metrics may improve accuracy of diagnosis of bronchiolitis obliterans syndrome after lung transplantation. Comput. Biol. Medicine 89: 275-281 (2017) - [j70]Yunlong He, Yuanjie Zheng, Yanna Zhao, Yanju Ren, Jian Lian, James C. Gee:
Retinal Image Denoising via Bilateral Filter with a Spatial Kernel of Optimally Oriented Line Spread Function. Comput. Math. Methods Medicine 2017: 1769834:1-1769834:13 (2017) - [c141]Min Chen, Jiancong Wang, Ipek Oguz, Brian L. Vanderbeek, James C. Gee:
Automated Segmentation of the Choroid in EDI-OCT Images with Retinal Pathology Using Convolution Neural Networks. FIFI/OMIA@MICCAI 2017: 177-184 - 2016
- [j69]Fabio Babiloni, James C. Gee:
The Power of Connecting Dots: Advanced Techniques to Evaluate Brain Functional Connectivity in Humans. IEEE Trans. Biomed. Eng. 63(12): 2447-2449 (2016) - [c140]Yufan He, Yankui Sun, Min Chen, Yuanjie Zheng, Hui Liu, Cecilia Leon, William Beltran, James C. Gee:
Automatic segmentation of canine retinal OCT using adaptive gradient enhancement and region growing. Biomedical Applications in Molecular, Structural, and Functional Imaging 2016: 97881Q - 2015
- [j68]Yuanjie Zheng, Benzheng Wei, Hui Liu, Rui Xiao, James C. Gee:
Measuring sparse temporal-variation for accurate registration of dynamic contrast-enhanced breast MR images. Comput. Medical Imaging Graph. 46: 73-80 (2015) - [j67]Qi Xia, Jianbing Ni, Ansuura John Bosco Aristotle Kanpogninge, James C. Gee:
Searchable Public-Key Encryption with Data Sharing in Dynamic Groups for Mobile Cloud Storage. J. Univers. Comput. Sci. 21(3): 440-453 (2015) - [j66]Benjamin M. Kandel, Danny J. J. Wang, John A. Detre, James C. Gee, Brian B. Avants:
Decomposing cerebral blood flow MRI into functional and structural components: A non-local approach based on prediction. NeuroImage 105: 156-170 (2015) - [j65]Nicholas J. Tustison, K. L. Shrinidhi, Max Wintermark, Christopher R. Durst, Benjamin M. Kandel, James C. Gee, Murray C. Grossman, Brian B. Avants:
Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR. Neuroinformatics 13(2): 209-225 (2015) - 2014
- [j64]Brian B. Avants, Nicholas J. Tustison, James C. Gee, Gang Song, Baohua Wu, Michael Stauffer:
The Insight ToolKit image registration framework. Frontiers Neuroinformatics 8: 44 (2014) - [j63]Jeffrey T. Duda, Philip A. Cook, James C. Gee:
Reproducibility of graph metrics of human brain structural networks. Frontiers Neuroinformatics 8: 46 (2014) - [j62]Yuanjie Zheng, Ebenezer Daniel, Allan A. Hunter III, Rui Xiao, Jianbin Gao, Hongsheng Li, Maureen G. Maguire, David H. Brainard, James C. Gee:
Landmark matching based retinal image alignment by enforcing sparsity in correspondence matrix. Medical Image Anal. 18(6): 903-913 (2014) - [j61]Daniel H. Adler, John Pluta, Salmon Kadivar, Caryne Craige, James C. Gee, Brian B. Avants, Paul A. Yushkevich:
Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI. NeuroImage 84: 505-523 (2014) - [j60]Paramveer S. Dhillon, David A. Wolk, Sandhitsu R. Das, Lyle H. Ungar, James C. Gee, Brian B. Avants:
Subject-specific functional parcellation via Prior Based Eigenanatomy. NeuroImage 99: 14-27 (2014) - [j59]Nicholas J. Tustison, Philip A. Cook, Arno Klein, Gang Song, Sandhitsu R. Das, Jeffrey T. Duda, Benjamin M. Kandel, Niels van Strien, James R. Stone, James C. Gee, Brian B. Avants:
Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements. NeuroImage 99: 166-179 (2014) - [j58]Philip A. Cook, Corey T. McMillan, Brian B. Avants, Jonathan E. Peelle, James C. Gee, Murray Grossman:
Relating brain anatomy and cognitive ability using a multivariate multimodal framework. NeuroImage 99: 477-486 (2014) - [c139]Jue Wu, Manzar Ashtari, Laura M. Betancourt, Nancy L. Brodsky, Joan M. Giannetta, James C. Gee, Hallam Hurt, Brian B. Avants:
Cortical parcellation for neonatal brains. ISBI 2014: 1377-1380 - [c138]Predrag R. Bakic, David D. Pokrajac, Mathew Thomas, Angeliki Skoura, Tatyana Nuzhnaya, Vasileios Megalooikonomou, Brad M. Keller, Yuanjie Zheng, Despina Kontos, James C. Gee, Gilda Cardenosa, Andrew D. A. Maidment:
Correlation between Topological Descriptors of the Breast Ductal Network from Clinical Galactograms and Texture Features of Corresponding Mammograms. Digital Mammography / IWDM 2014: 658-665 - [c137]Benjamin M. Kandel, Danny J. J. Wang, James C. Gee, Brian B. Avants:
Single-Subject Structural Networks with Closed-Form Rotation Invariant Matching Improve Power in Developmental Studies of the Cortex. MICCAI (3) 2014: 137-144 - 2013
- [j57]Yuanjie Zheng, Stephen Lin, Sing Bing Kang, Rui Xiao, James C. Gee, Chandra Kambhamettu:
Single-Image Vignetting Correction from Gradient Distribution Symmetries. IEEE Trans. Pattern Anal. Mach. Intell. 35(6): 1480-1494 (2013) - [c136]Benjamin M. Kandel, David A. Wolk, James C. Gee, Brian B. Avants:
Predicting Cognitive Data from Medical Images Using Sparse Linear Regression. IPMI 2013: 86-97 - [c135]Gang Song, Yang Liu, Baohua Wu, Brian B. Avants, James C. Gee:
Using Region Trajectories to Construct an Accurate and Efficient Polyaffine Transform Model. IPMI 2013: 668-679 - [c134]Yuanjie Zheng, Brian Vanderbeek, Ebenezer Daniel, Dwight Stambolian, Maureen G. Maguire, David H. Brainard, James C. Gee:
An automated drusen detection system for classifying age-related macular degeneration with color fundus photographs. ISBI 2013: 1448-1451 - [c133]Yuanjie Zheng, Yan Wang, Brad M. Keller, Emily F. Conant, James C. Gee, Despina Kontos:
A fully-automated software pipeline for integrating breast density and parenchymal texture analysis for digital mammograms: parameter optimization in a case-control breast cancer risk assessment study. Computer-Aided Diagnosis 2013: 86701B - [c132]Yan Wang, Brad M. Keller, Yuanjie Zheng, Raymond Joseph Acciavatti, James C. Gee, Andrew D. A. Maidment, Despina Kontos:
Texture feature standardization in digital mammography for improving generalizability across devices. Computer-Aided Diagnosis 2013: 867026 - [c131]Yuanjie Zheng, Dwight Stambolian, Joan O'Brien, James C. Gee:
Optic Disc and Cup Segmentation from Color Fundus Photograph Using Graph Cut with Priors. MICCAI (2) 2013: 75-82 - [c130]Yuanjie Zheng, Rui Xiao, Yan Wang, James C. Gee:
A Generative Model for OCT Retinal Layer Segmentation by Integrating Graph-Based Multi-surface Searching and Image Registration. MICCAI (1) 2013: 428-435 - [c129]Jeffrey T. Duda, John A. Detre, Junghoon Kim, James C. Gee, Brian B. Avants:
Fusing Functional Signals by Sparse Canonical Correlation Analysis Improves Network Reproducibility. MICCAI (3) 2013: 635-642 - [c128]Paramveer S. Dhillon, James C. Gee, Lyle H. Ungar, Brian B. Avants:
Anatomically-Constrained PCA for Image Parcellation. PRNI 2013: 25-28 - [e2]James C. Gee, Sarang C. Joshi, Kilian M. Pohl, William M. Wells III, Lilla Zöllei:
Information Processing in Medical Imaging - 23rd International Conference, IPMI 2013, Asilomar, CA, USA, June 28-July 3, 2013. Proceedings. Lecture Notes in Computer Science 7917, Springer 2013, ISBN 978-3-642-38867-5 [contents] - 2012
- [j56]Nagesh Adluru, Hui Zhang, Andrew S. Fox, Steven E. Shelton, Chad M. Ennis, Anne M. Bartosic, Jonathan A. Oler, Do P. M. Tromp, Elizabeth Zakszewski, James C. Gee, Ned H. Kalin, Andrew L. Alexander:
A diffusion tensor brain template for Rhesus Macaques. NeuroImage 59(1): 306-318 (2012) - [c127]Seung-Goo Kim, Brian B. Avants, Hyekyoung Lee, James C. Gee, Moo K. Chung, Richard J. Davidson, Jamie L. Hanson, Seth D. Pollak:
Agreement between the white matter connectivity based on the tensor-based morphometry and the volumetric white matter parcellations based on diffusion tensor imaging. ISBI 2012: 42-45 - [c126]Daniel H. Adler, Alex Yang Liu, John Pluta, Salmon Kadivar, Sylvia Orozco, Hongzhi Wang, James C. Gee, Brian B. Avants, Paul A. Yushkevich:
Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI. ISBI 2012: 294-297 - [c125]Yuanjie Zheng, Brian Vanderbeek, Rui Xiao, Ebenezer Daniel, Dwight Stambolian, Maureen G. Maguire, Joan O'Brien, James C. Gee:
Retrospective illumination correction of retinal fundus images from gradient distribution sparsity. ISBI 2012: 972-975 - [c124]Paramveer S. Dhillon, Brian B. Avants, Lyle H. Ungar, James C. Gee:
Partial sparse canonical correlation analysis (PSCCA) for population studies in medical imaging. ISBI 2012: 1132-1135 - [c123]Yan Wang, Brad M. Keller, Yuanjie Zheng, Raymond Joseph Acciavatti, James C. Gee, Andrew D. A. Maidment, Despina Kontos:
A Phantom Study for Assessing the Effect of Different Digital Detectors on Mammographic Texture Features. Digital Mammography / IWDM 2012: 604-610 - [c122]Brian B. Avants, Paramveer S. Dhillon, Benjamin M. Kandel, Philip A. Cook, Corey McMillan, Murray Grossman, James C. Gee:
Eigenanatomy Improves Detection Power for Longitudinal Cortical Change. MICCAI (3) 2012: 206-213 - [c121]Brian B. Avants, Nicholas J. Tustison, Gang Song, Baohua Wu, Michael Stauffer, Matthew McCormick, Hans J. Johnson, James C. Gee:
A Unified Image Registration Framework for ITK. WBIR 2012: 266-275 - 2011
- [j55]Brian B. Avants, Nicholas J. Tustison, Gang Song, Philip A. Cook, Arno Klein, James C. Gee:
A reproducible evaluation of ANTs similarity metric performance in brain image registration. NeuroImage 54(3): 2033-2044 (2011) - [j54]Brian B. Avants, Nicholas J. Tustison, Jue Wu, Philip A. Cook, James C. Gee:
An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data. Neuroinformatics 9(4): 381-400 (2011) - [j53]Nicholas J. Tustison, Brian B. Avants, Marcelo Siqueira, James C. Gee:
Topological Well-Composedness and Glamorous Glue: A Digital Gluing Algorithm for Topologically Constrained Front Propagation. IEEE Trans. Image Process. 20(6): 1756-1761 (2011) - [j52]Caroline C. Brun, Natasha Leporé, Xavier Pennec, Yi-Yu Chou, Agatha D. Lee, Greig I. de Zubicaray, Katie McMahon, Margaret J. Wright, James C. Gee, Paul M. Thompson:
A Nonconservative Lagrangian Framework for Statistical Fluid Registration - SAFIRA. IEEE Trans. Medical Imaging 30(2): 184-202 (2011) - [j51]Nicholas J. Tustison, Suyash P. Awate, Gang Song, Tessa Sundaram Cook, James C. Gee:
Point Set Registration Using Havrda-Charvat-Tsallis Entropy Measures. IEEE Trans. Medical Imaging 30(2): 451-460 (2011) - [j50]Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim:
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Medical Imaging 30(11): 1901-1920 (2011) - [c120]Yuanjie Zheng, Allan A. Hunter III, Jue Wu, Hongzhi Wang, Jianbin Gao, Maureen G. Maguire, James C. Gee:
Landmark Matching Based Automatic Retinal Image Registration with Linear Programming and Self-similarities. IPMI 2011: 674-685 - [c119]Yuanjie Zheng, Hongzhi Wang, Jue Wu, Jianbin Gao, James C. Gee:
Multiscale analysis revisited: Detection of drusen and vessel in digital retinal images. ISBI 2011: 689-692 - [c118]Seung-Goo Kim, Moo K. Chung, Jamie L. Hanson, Brian B. Avants, James C. Gee, Richard J. Davidson, Seth D. Pollak:
Structural connectivity via the tensor-based morphometry. ISBI 2011: 808-811 - [c117]Jue Wu, Kathryn A. Davis, Allan Azarion, Yuanjie Zheng, Hongzhi Wang, Brian Litt, James C. Gee:
Brain Parcellation Aids in Electrode Localization in Epileptic Patients. AE-CAI 2011: 130-137 - [c116]Brad M. Keller, Diane Nathan, Yan Wang, Yuanjie Zheng, James C. Gee, Emily F. Conant, Despina Kontos:
Adaptive Multi-cluster Fuzzy C-Means Segmentation of Breast Parenchymal Tissue in Digital Mammography. MICCAI (3) 2011: 562-569 - 2010
- [j49]Sheng-Zheng Wang, Jie Yang, James C. Gee:
Cranio-maxillofacial surgery simulation based on pre-specified target face configurations. J. Zhejiang Univ. Sci. C 11(7): 504-513 (2010) - [j48]Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich:
A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features. Medical Image Anal. 14(5): 666-673 (2010) - [j47]Hengyi Rao, Laura M. Betancourt, Joan M. Giannetta, Nancy L. Brodsky, Marc Korczykowski, Brian B. Avants, James C. Gee, Jiongjiong Wang, Hallam Hurt, John A. Detre, Martha J. Farah:
Early parental care is important for hippocampal maturation: Evidence from brain morphology in humans. NeuroImage 49(1): 1144-1150 (2010) - [j46]Brian B. Avants, Paul A. Yushkevich, John Pluta, David Minkoff, Marc Korczykowski, John A. Detre, James C. Gee:
The optimal template effect in hippocampus studies of diseased populations. NeuroImage 49(3): 2457-2466 (2010) - [j45]Brian B. Avants, Philip A. Cook, Lyle H. Ungar, James C. Gee, Murray Grossman:
Dementia induces correlated reductions in white matter integrity and cortical thickness: A multivariate neuroimaging study with sparse canonical correlation analysis. NeuroImage 50(3): 1004-1016 (2010) - [j44]Arno Klein, Satrajit S. Ghosh, Brian B. Avants, B. T. Thomas Yeo, Bruce Fischl, Babak A. Ardekani, James C. Gee, J. John Mann, Ramin V. Parsey:
Evaluation of volume-based and surface-based brain image registration methods. NeuroImage 51(1): 214-220 (2010) - [j43]Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee:
Cerebral cortical folding analysis with multivariate modeling and testing: Studies on gender differences and neonatal development. NeuroImage 53(2): 450-459 (2010) - [j42]Nicholas J. Tustison, Brian B. Avants, Philip A. Cook, Yuanjie Zheng, Alexander Egan, Paul A. Yushkevich, James C. Gee:
N4ITK: Improved N3 Bias Correction. IEEE Trans. Medical Imaging 29(6): 1310-1320 (2010) - [c115]Yuanjie Zheng, James C. Gee:
Estimation of image bias field with sparsity constraints. CVPR 2010: 255-262 - [c114]Yuanjie Zheng, Andrew D. A. Maidment, James C. Gee:
Accurate registration of dynamic contrast-enhanced breast MR images with robust estimation and linear programming. ISBI 2010: 536-539 - [c113]Qiang Wang, Amalia Charisi, Longin Jan Latecki, James C. Gee, Vasilis Megalooikonomou:
Shape similarity analysis of regions of interest in medical images. Computer-Aided Diagnosis 2010: 762428 - [c112]Ramón Aranda, Mariano Rivera, Alonso Ramirez-Manzanares, Manzar Ashtari, James C. Gee:
Massive Particles for Brain Tractography. MICAI (1) 2010: 446-457 - [c111]Jeffrey T. Duda, Corey McMillan, Murray Grossman, James C. Gee:
Relating Structural and Functional Connectivity to Performance in a Communication Task. MICCAI (2) 2010: 282-289 - [c110]Brian B. Avants, Philip A. Cook, Corey McMillan, Murray Grossman, Nicholas J. Tustison, Yuanjie Zheng, James C. Gee:
Sparse Unbiased Analysis of Anatomical Variance in Longitudinal Imaging. MICCAI (1) 2010: 324-331 - [c109]Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee:
A Computational White Matter Atlas for Aging with Surface-Based Representation of Fasciculi. WBIR 2010: 83-90
2000 – 2009
- 2009
- [j41]Despina Kontos, Vasileios Megalooikonomou, James C. Gee:
Morphometric analysis of brain images with reduced number of statistical tests: A study on the gender-related differentiation of the corpus callosum. Artif. Intell. Medicine 47(1): 75-86 (2009) - [j40]Paul A. Yushkevich, Brian B. Avants, John Pluta, Sandhitsu R. Das, David Minkoff, Dawn Mechanic-Hamilton, Simon Glynn, Stephen Pickup, Weixia Liu, James C. Gee, Murray Grossman, John A. Detre:
A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T. NeuroImage 44(2): 385-398 (2009) - [j39]Sandhitsu R. Das, Brian B. Avants, Murray Grossman, James C. Gee:
Registration based cortical thickness measurement. NeuroImage 45(3): 867-879 (2009) - [j38]Arno Klein, Jesper L. R. Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey:
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage 46(3): 786-802 (2009) - [j37]Nicholas J. Tustison, Brian B. Avants, James C. Gee:
Directly Manipulated Free-Form Deformation Image Registration. IEEE Trans. Image Process. 18(3): 624-635 (2009) - [c108]Nicholas J. Tustison, Suyash P. Awate, Gang Song, Tessa Sundaram Cook, James C. Gee:
A New Information-Theoretic Measure to Control the Robustness-Sensitivity Trade-Off for DMFFD Point-Set Registration. IPMI 2009: 215-226 - [c107]Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee:
Multivariate High-Dimensional Cortical Folding Analysis, Combining Complexity and Shape, in Neonates with Congenital Heart Disease. IPMI 2009: 552-563 - [c106]Gang Song, Eduardo Barbosa Jr., Nicholas J. Tustison, James C. Gee, Warren B. Gefter, Maryl Kreider, Drew A. Torigian:
Computational Analysis of HRCT Images for Characterization and Differentiation of ILD and COPD. ISBI 2009: 999-1002 - [c105]Sheng-Zheng Wang, James C. Gee, Jie Yang:
A Framework for Craniofacial Surgery Simulation Based on Pre-Specified Target Face Configurations. ISBI 2009: 1055-1058 - [c104]Alonso Ramirez-Manzanares, Mariano Rivera, James C. Gee:
Denoising Intra-voxel Axon Fiber Orientations by Means of ECQMMF Method. MICAI 2009: 303-312 - [c103]Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich:
A Tract-Specific Framework for White Matter Morphometry Combining Macroscopic and Microscopic Tract Features. MICCAI (1) 2009: 141-149 - [c102]Suyash P. Awate, Paul A. Yushkevich, Daniel J. Licht, James C. Gee:
Gender Differences in Cerebral Cortical Folding: Multivariate Complexity-Shape Analysis with Insights into Handling Brain-Volume Differences. MICCAI (1) 2009: 200-207 - [c101]Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee:
Tensor-Based Morphometry of Fibrous Structures with Application to Human Brain White Matter. MICCAI (1) 2009: 466-473 - [c100]Yuanjie Zheng, Murray Grossman, Suyash P. Awate, James C. Gee:
Automatic Correction of Intensity Nonuniformity from Sparseness of Gradient Distribution in Medical Images. MICCAI (1) 2009: 852-859 - 2008
- [j36]Marcelo Siqueira, Longin Jan Latecki, Nicholas J. Tustison, Jean H. Gallier, James C. Gee:
Topological Repairing of 3D Digital Images. J. Math. Imaging Vis. 30(3): 249-274 (2008) - [j35]Brian B. Avants, Charles L. Epstein, Murray Grossman, James C. Gee:
Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain. Medical Image Anal. 12(1): 26-41 (2008) - [j34]Junghoon Kim, Brian B. Avants, Sunil Patel, John Whyte, H. Branch Coslett, John Pluta, John A. Detre, James C. Gee:
Structural consequences of diffuse traumatic brain injury: A large deformation tensor-based morphometry study. NeuroImage 39(3): 1014-1026 (2008) - [j33]Susana Novais-Santos, James C. Gee, Maliha Shah, Vanessa Troiani, Melissa Work, Murray Grossman:
Erratum to "Resolving sentence ambiguity with planning and working memory resources: Evidence from fMRI" [NeuroImage 37 (2007) 361-378]. NeuroImage 40(2): 988-989 (2008) - [j32]Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee:
Structure-specific statistical mapping of white matter tracts. NeuroImage 41(2): 448-461 (2008) - [j31]James C. Gee:
Digital Brain Atlases for Biomedicine [Life Sciences]. IEEE Signal Process. Mag. 25(1): 138-141 (2008) - [c99]Jeffrey T. Duda, Brian B. Avants, Junghoon Kim, Hui Zhang, Sunil Patel, John Whyte, James C. Gee:
Multivariate analysis of thalamo-cortical connectivity loss in TBI. CVPR Workshops 2008: 1-8 - [c98]Alonso Ramirez-Manzanares, Hui Zhang, Mariano Rivera, James C. Gee:
Robust regularization for the estimation of intra-voxel axon fiber orientations. CVPR Workshops 2008: 1-8 - [c97]Zhuang Song, Suyash P. Awate, James C. Gee:
Nonparametric Markov priors for tissue segmentation. ISBI 2008: 73-76 - [c96]Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, Stephen Pickup, Weixia Liu, John A. Detre, Murray Grossman, James C. Gee:
Building an atlas of hippocampal subfields using postmortem MRI. ISBI 2008: 161-164 - [c95]Suyash P. Awate, Hui Zhang, Tony J. Simon, James C. Gee:
Multivariate segmentation of brain tissues by fusion of MRI and DTI data. ISBI 2008: 213-216 - [c94]Sandhitsu R. Das, Dawn Mechanic-Hamilton, Marc Korczykowski, Brian B. Avants, John A. Detre, James C. Gee, Paul A. Yushkevich:
Spatial correspondence based asymmetry analysis in FMRI. ISBI 2008: 616-619 - [c93]Hui Zhang, Paul A. Yushkevich, Tony J. Simon, James C. Gee:
Surface-based modeling of white matter fasciculi with orientation encoding. ISBI 2008: 708-711 - [c92]Nicholas J. Tustison, Suyash P. Awate, Talissa A. Altes, James C. Gee, Jing Cai, G. Wilson Miller, Eduard E. de Lange, John P. Mugler III:
Point-set registration of tagged HE-3 images using a structurally-based Jensen-Shannon divergence measure within a deterministic annealing framework. ISBI 2008: 772-775 - [c91]Philip A. Cook, Hui Zhang, Suyash P. Awate, James C. Gee:
Atlas-guided probabilistic diffusion-tensor fiber tractography. ISBI 2008: 951-954 - [c90]Hui Sun, Brian B. Avants, Alejandro F. Frangi, Sebastián Ordas, James C. Gee, Paul A. Yushkevich:
Branching medial models for cardiac shape representation. ISBI 2008: 1485-1488 - [c89]Alonso Ramirez-Manzanares, Philip A. Cook, James C. Gee:
A Comparison of Methods for Recovering Intra-voxel White Matter Fiber Architecture from Clinical Diffusion Imaging Scans. MICCAI (1) 2008: 305-312 - [c88]Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, John A. Detre, Murray Grossman, James C. Gee:
Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI. MICCAI (1) 2008: 510-517 - [c87]Suyash P. Awate, Lawrence Win, Paul A. Yushkevich, Robert T. Schultz, James C. Gee:
3D Cerebral Cortical Morphometry in Autism: Increased Folding in Children and Adolescents in Frontal, Parietal, and Temporal Lobes. MICCAI (1) 2008: 559-567 - [c86]Hui Sun, Brian B. Avants, Alejandro F. Frangi, Federico Sukno, James C. Gee, Paul A. Yushkevich:
Cardiac Medial Modeling and Time-Course Heart Wall Thickness Analysis. MICCAI (2) 2008: 766-773 - 2007
- [j30]Paul A. Yushkevich, John A. Detre, Dawn Mechanic-Hamilton, María A. Fernández-Seara, Kathy Z. Tang, Angela Hoang, Marc Korczykowski, Hui Zhang, James C. Gee:
Hippocampus-specific fMRI group activation analysis using the continuous medial representation. NeuroImage 35(4): 1516-1530 (2007) - [j29]Yong Fan, Hengyi Rao, Hallam Hurt, Joan M. Giannetta, Marc Korczykowski, David Shera, Brian B. Avants, James C. Gee, Jiongjiong Wang, Dinggang Shen:
Multivariate examination of brain abnormality using both structural and functional MRI. NeuroImage 36(4): 1189-1199 (2007) - [j28]Susana Novais-Santos, James C. Gee, Maliha Shah, Vanessa Troiani, Melissa Work, Murray Grossman:
Resolving sentence ambiguity with planning and working memory resources: Evidence from fMRI. NeuroImage 37(1): 361-378 (2007) - [j27]Lydia Ng, Sayan D. Pathak, Chihchau Kuan, Christopher Lau, Hong-wei Dong, Andrew Sodt, Chinh Dang, Brian B. Avants, Paul A. Yushkevich, James C. Gee, David R. Haynor, Ed S. Lein, Allan Jones, Michael Hawrylycz:
Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain. IEEE ACM Trans. Comput. Biol. Bioinform. 4(3): 382-393 (2007) - [j26]James C. Gee, Paul M. Thompson:
Guest editorial: Special Issue on Computational Neuroanatomy. IEEE Trans. Medical Imaging 26(4): 425-426 (2007) - [j25]Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee:
Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis. IEEE Trans. Medical Imaging 26(9): 1166-1178 (2007) - [j24]Suyash P. Awate, Hui Zhang, James C. Gee:
A Fuzzy, Nonparametric Segmentation Framework for DTI and MRI Analysis: With Applications to DTI-Tract Extraction. IEEE Trans. Medical Imaging 26(11): 1525-1536 (2007) - [j23]Hui Zhang, Brian B. Avants, Paul A. Yushkevich, John H. Woo, Sumei Wang, L. F. McCluskey, L. B. Elman, Elias R. Melhem, James C. Gee:
High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis. IEEE Trans. Medical Imaging 26(11): 1585-1597 (2007) - [c85]Sandhitsu R. Das, Brian B. Avants, Murray Grossman, James C. Gee:
Measuring Cortical Thickness Using An Image Domain Local Surface Model And Topology Preserving Segmentation. ICCV 2007: 1-8 - [c84]Gang Song, Brian B. Avants, James C. Gee:
Multi-start Method with Prior Learning for Image Registration. ICCV 2007: 1-8 - [c83]Nicholas J. Tustison, Brian B. Avants, James C. Gee:
Improved FFD B-Spline Image Registration. ICCV 2007: 1-8 - [c82]Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee:
Structure-Specific Statistical Mapping of White Matter Tracts using the Continuous Medial Representation. ICCV 2007: 1-8 - [c81]Suyash P. Awate, James C. Gee:
A Fuzzy, Nonparametric Segmentation Framework for DTI and MRI Analysis. IPMI 2007: 296-307 - [c80]Nicholas J. Tustison, Talissa A. Altes, James C. Gee, Jing Cai, Eduard E. de Lange, John P. Mugler III:
Pulmonary Kinematics from Hyperpolarized Helium-3 Tagged Magnetic Resonance Imaging. ISBI 2007: 368-371 - [c79]Paul A. Yushkevich, John A. Detre, James C. Gee:
Non-Uniform Smoothing in Hippocampus-Specific Group Fmri Analysis. ISBI 2007: 420-423 - [c78]Brian B. Avants, Charles L. Epstein, James C. Gee:
Symmetric Shape Averaging in the Diffeomorphic Space. ISBI 2007: 636-639 - [c77]Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee:
Unbiased White Matter Atlas Construction Using Diffusion Tensor Images. MICCAI (2) 2007: 211-218 - [c76]Suyash P. Awate, Hui Zhang, James C. Gee:
Fuzzy Nonparametric DTI Segmentation for Robust Cingulum-Tract Extraction. MICCAI (1) 2007: 294-301 - [c75]Brian B. Avants, Chivon Anderson, Murray Grossman, James C. Gee:
Spatiotemporal Normalization for Longitudinal Analysis of Gray Matter Atrophy in Frontotemporal Dementia. MICCAI (2) 2007: 303-310 - [c74]Brian B. Avants, Jeffrey T. Duda, Hui Zhang, James C. Gee:
Multivariate Normalization with Symmetric Diffeomorphisms for Multivariate Studies. MICCAI (1) 2007: 359-366 - [c73]Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee:
Evaluation of Shape-Based Normalization in the Corpus Callosum for White Matter Connectivity Analysis. MICCAI (2) 2007: 777-784 - [c72]Tessa Sundaram Cook, Nicholas J. Tustison, Jürgen Biederer, Ralf Tetzlaff, James C. Gee:
How Do Registration Parameters Affect Quantitation of Lung Kinematics? MICCAI (1) 2007: 817-824 - [c71]Zhuang Song, Suyash P. Awate, Daniel J. Licht, James C. Gee:
Clinical Neonatal Brain MRI Segmentation Using Adaptive Nonparametric Data Models and Intensity-Based Markov Priors. MICCAI (1) 2007: 883-890 - 2006
- [j22]Sumiaki Matsumoto, Harold L. Kundel, James C. Gee, Warren B. Gefter, Hiroto Hatabu:
Pulmonary nodule detection in CT images with quantized convergence index filter. Medical Image Anal. 10(3): 343-352 (2006) - [j21]J. B. Antoine Maintz, James C. Gee:
Editorial. Medical Image Anal. 10(3): 396 (2006) - [j20]Brian B. Avants, P. Thomas Schoenemann, James C. Gee:
Lagrangian frame diffeomorphic image registration: Morphometric comparison of human and chimpanzee cortex. Medical Image Anal. 10(3): 397-412 (2006) - [j19]Hui Zhang, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee:
Deformable registration of diffusion tensor MR images with explicit orientation optimization. Medical Image Anal. 10(5): 764-785 (2006) - [j18]Paul A. Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C. Gee, Guido Gerig:
User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability. NeuroImage 31(3): 1116-1128 (2006) - [j17]Paul A. Yushkevich, Hui Zhang, James C. Gee:
Continuous Medial Representation for Anatomical Structures. IEEE Trans. Medical Imaging 25(12): 1547-1564 (2006) - [c70]Hui Sun, Paul A. Yushkevich, Hui Zhang, James C. Gee, Tony J. Simon:
Efficient Generation of Shape-Based Reference Frames for the Corpus Callosum for DTI-based Connectivity Analysis. CVPR Workshops 2006: 87 - [c69]Brian B. Avants, Hallam Hurt, Joan M. Giannetta, Charles L. Epstein, Jiongjiong Wang, James C. Gee:
Analyzing Effects of Intra-Uterine Cocaine Exposure on Adolescent Brain Structure with Symmetric Diffeomorphisms. CVPR Workshops 2006: 94 - [c68]Zhuang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee:
Adaptive graph cuts with tissue priors for brain MRI segmentation. ISBI 2006: 762-765 - [c67]Brian B. Avants, Charles L. Epstein, James C. Gee:
Geodesic Image Normalization and Temporal Parameterization in the Space of Diffeomorphisms. MIAR 2006: 9-16 - [c66]Nicholas J. Tustison, James C. Gee:
Generalized n-D Ck B-Spline Scattered Data Approximation with Confidence Values. MIAR 2006: 76-83 - [c65]Paul A. Yushkevich, John A. Detre, Kathy Z. Tang, Angela Hoang, Dawn Mechanic-Hamilton, María A. Fernández-Seara, Marc Korczykowski, Hui Zhang, James C. Gee:
Hippocampus-Specific fMRI Group Activation Analysis with Continuous M-Reps. MICCAI (2) 2006: 284-291 - [c64]Zhuang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee:
Integrated Graph Cuts for Brain MRI Segmentation. MICCAI (2) 2006: 831-838 - [c63]Brian B. Avants, Murray Grossman, James C. Gee:
Symmetric Diffeomorphic Image Registration: Evaluating Automated Labeling of Elderly and Neurodegenerative Cortex and Frontal Lobe. WBIR 2006: 50-57 - [c62]Paul A. Yushkevich, Brian B. Avants, Lydia Ng, Michael Hawrylycz, Pablo D. Burstein, Hui Zhang, James C. Gee:
3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach. WBIR 2006: 230-237 - [c61]Nicholas J. Tustison, Brian B. Avants, Tessa A. Sundaram, Jeffrey T. Duda, James C. Gee:
A Generalization of Free-Form Deformation Image Registration Within the ITK Finite Element Framework. WBIR 2006: 238-246 - [p2]James C. Gee, Hui Zhang, Abraham Dubb, Brian B. Avants, Paul A. Yushkevich, Jeffrey T. Duda:
Anatomy-Based Visualizations of Diffusion Tensor Images of Brain White Matter. Visualization and Processing of Tensor Fields 2006: 155-163 - [p1]James C. Gee, Daniel C. Alexander:
Diffusion-Tensor Image Registration. Visualization and Processing of Tensor Fields 2006: 327-342 - 2005
- [j16]Suneeta Ramaswami, Marcelo Siqueira, Tessa A. Sundaram, Jean H. Gallier, James C. Gee:
Constrained quadrilateral meshes of bounded size. Int. J. Comput. Geom. Appl. 15(1): 55-98 (2005) - [j15]Tessa A. Sundaram, James C. Gee:
Towards a model of lung biomechanics: pulmonary kinematics via registration of serial lung images. Medical Image Anal. 9(6): 524-537 (2005) - [j14]Tony J. Simon, Lijun Ding, Joel P. Bish, Donna M. McDonald-McGinn, Elaine H. Zackai, James C. Gee:
Volumetric, connective, and morphologic changes in the brains of children with chromosome 22q11.2 deletion syndrome: an integrative study. NeuroImage 25(1): 169-180 (2005) - [c60]Despina Kontos, Vasileios Megalooikonomou, James C. Gee:
Reducing the Computational Cost for Statistical Medical Image Analysis: An MRI Study on the Sexual Morphological Differentiation of the Corpus Callosum. CBMS 2005: 282-287 - [c59]Paul A. Yushkevich, Hui Zhang, James C. Gee:
Parametric Medial Shape Representation in 3-D via the Poisson Partial Differential Equation with Non-linear Boundary Conditions. IPMI 2005: 162-173 - [c58]Philip A. Cook, Hui Zhang, Brian B. Avants, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee, Olga Ciccarelli, Alan J. Thompson:
An Automated Approach to Connectivity-Based Partitioning of Brain Structures. MICCAI 2005: 164-171 - [c57]Hui Zhang, Paul A. Yushkevich, James C. Gee:
Deformable Registration of Diffusion Tensor MR Images with Explicit Orientation Optimization. MICCAI 2005: 172-179 - [c56]Tessa A. Sundaram, Brian B. Avants, James C. Gee:
Towards a Dynamic Model of Pulmonary Parenchymal Deformation: Evaluation of Methods for Temporal Reparameterization of Lung Data. MICCAI (2) 2005: 328-335 - [c55]Paul A. Yushkevich, Hui Zhang, James C. Gee:
Statistical Modeling of Shape and Appearance Using the Continuous Medial Representation. MICCAI (2) 2005: 725-732 - [c54]Brian B. Avants, Charles L. Epstein, James C. Gee:
Geodesic Image Interpolation: Parameterizing and Interpolating Spatiotemporal Images. VLSM 2005: 247-258 - 2004
- [j13]Alexei Manso Corrêa Machado, James C. Gee, Mario Fernando Montenegro Campos:
Structural shape characterization via exploratory factor analysis. Artif. Intell. Medicine 30(2): 97-118 (2004) - [j12]Alexei Manso Corrêa Machado, James C. Gee, Mario Fernando Montenegro Campos:
Visual data mining for modeling prior distributions in morphometry. IEEE Signal Process. Mag. 21(3): 20-27 (2004) - [c53]Mariano Rivera, James C. Gee:
Two--level MRF Models for Image Restoration and Segmentation. BMVC 2004: 1-10 - [c52]Hui Zhang, Paul A. Yushkevich, James C. Gee:
Registration of Diffusion Tensor Images. CVPR (1) 2004: 842-847 - [c51]Brian B. Avants, James C. Gee:
Symmetric Geodesic Shape Averaging and Shape Interpolation. ECCV Workshops CVAMIA and MMBIA 2004: 99-110 - [c50]Hui Zhang, Paul A. Yushkevich, James C. Gee:
Towards Diffusion Profile Image Registration. ISBI 2004: 324-327 - [c49]Brian B. Avants, James C. Gee:
Shape Averaging with Diffeomorphic Flows for Atlas Creation. ISBI 2004: 595-598 - [c48]Abraham Dubb, Paul A. Yushkevich, Zhiyong Xie, Ruben C. Gur, Raquel E. Gur, James C. Gee:
Regional Structural Characterization of the Brain of Schizophrenia Patients. MICCAI (2) 2004: 688-695 - [c47]Tessa A. Sundaram, Brian B. Avants, James C. Gee:
A Dynamic Model of Average Lung Deformation Using Capacity-Based Reparameterization and Shape Averaging of Lung MR Images. MICCAI (2) 2004: 1000-1007 - 2003
- [j11]Peter Rogelj, Stanislav Kovacic, James C. Gee:
Point similarity measures for non-rigid registration of multi-modal data. Comput. Vis. Image Underst. 92(1): 112-140 (2003) - [j10]James C. Gee, Mostafa Analoui:
Guest Editorial: Special Section on Model-based Medical Image Processing and Analysis. J. Electronic Imaging 12(1): 6 (2003) - [j9]Alexei Manso Corrêa Machado, Mario Fernando Montenegro Campos, James C. Gee:
Bayesian model for intensity mapping in magnetic resonance image registration. J. Electronic Imaging 12(1): 31-39 (2003) - [j8]Abraham Dubb, Ruben C. Gur, Brian B. Avants, James C. Gee:
Characterization of sexual dimorphism in the human corpus callosum. NeuroImage 20(1): 512-519 (2003) - [c46]Suneeta Ramaswami, Marcelo Siqueira, Tessa A. Sundaram, Jean H. Gallier, James C. Gee:
A New Algorithm for Generating Quadrilateral Meshes and its Application to FE-Based Image Registration. IMR 2003: 159-170 - [c45]Brian B. Avants, James C. Gee:
The Shape Operator for Differential Analysis of Images. IPMI 2003: 101-113 - [c44]Abraham Dubb, Zhiyong Xie, Ruben C. Gur, Raquel E. Gur, James C. Gee:
Characterization of Brain Plasticity in Schizophrenia Using Template Deformation. MICCAI (2) 2003: 457-463 - [c43]Jeffrey T. Duda, Mariano Rivera, Daniel C. Alexander, James C. Gee:
A method for non-rigid registration of diffusion tensor magnetic resonance images. Image Processing 2003 - [c42]Punam K. Saha, Hui Zhang, Jayaram K. Udupa, James C. Gee:
Tensor scale-based image registration. Image Processing 2003 - [c41]Zhiyong Xie, Lydia Ng, James C. Gee:
Two algorithms for non-rigid image registration and their evaluation. Image Processing 2003 - [c40]Brian B. Avants, James C. Gee:
Continuous Curve Matching with Scale-Space Curvature and Extrema-Based Scale Selection. Scale-Space 2003: 798-813 - [c39]Brian B. Avants, James C. Gee:
Formulation and Evaluation of Variational Curve Matching with Prior Constraints. WBIR 2003: 21-30 - [e1]James C. Gee, J. B. Antoine Maintz, Michael W. Vannier:
Biomedical Image Registration, Second International Workshop, WBIR 2003, Philadelphia, PA, USA, June 23-24, 2003, Revised Papers. Lecture Notes in Computer Science 2717, Springer 2003, ISBN 3-540-20343-5 [contents] - 2002
- [j7]Murray Grossman, Ayanna Cooke, Christian Devita, David C. Alsop, John A. Detre, Willis Chen, James C. Gee:
Age-Related Changes in Working Memory during Sentence Comprehension: An fMRI Study. NeuroImage 15(2): 302-317 (2002) - [j6]Murray Grossman, Phyllis Koenig, Christian Devita, Guila Glosser, David C. Alsop, John A. Detre, James C. Gee:
The Neural Basis for Category-Specific Knowledge: An fMRI Study. NeuroImage 15(4): 936-948 (2002) - [j5]David J. Pettey, James C. Gee:
Sexual Dimorphism in the Corpus Callosum: A Characterization of Local Size Variations and a Classification Driven Approach to Morphometry. NeuroImage 17(3): 1504-1511 (2002) - [c38]Abraham Dubb, Brian B. Avants, Ruben C. Gur, James C. Gee:
Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation. AMIA 2002 - [c37]Mariano Rivera, James C. Gee:
Image Segmentation by Flexible Models Based on Robust Regularized Networks. ECCV (3) 2002: 621-634 - [c36]Brian B. Avants, James C. Gee:
Robust rotations between anatomical curves. ISBI 2002: 337-340 - [c35]Luis Ibáñez, Lydia Ng, James C. Gee, Stephen R. Aylward:
Registration patterns: the generic framework for image registration of the insight toolkit. ISBI 2002: 345-348 - [c34]James C. Gee, Daniel C. Alexander, Mariano Rivera, Jeffrey T. Duda:
Non-rigid registration of diffusion tensor MR images. ISBI 2002: 477-480 - [c33]Abraham Dubb, Brian B. Avants, Ruben C. Gur, James C. Gee:
Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation. MICCAI (2) 2002: 381-388 - [c32]Aljaz Noe, James C. Gee:
Efficient Partial Volume Tissue Classification in MRI Scans. MICCAI (1) 2002: 698-705 - [c31]James C. Gee, Tessa A. Sundaram, Ichiro Hasegawa, Hidemasa Uematsu, Hiroto Hatabu:
Characterization of Regional Pulmonary Mechanics from Serial MRI Data. MICCAI (1) 2002: 762-769 - [c30]Michael P. Lin, Christian Devita, James C. Gee, Murray Grossman:
Using Voxel-Based Morphometry to Examine Atrophy-Behavior Correlates in Alzheimer's Disease and Frontotemporal Dementia. MICCAI (1) 2002: 770-776 - [c29]Brian B. Avants, James C. Gee:
Soft parametric curve matching in scale-space. Image Processing 2002 - [c28]Jeffrey T. Duda, Hee Kwon Song, Ronald Wolf, Alex C. Wright, James C. Gee, Felix W. Wehrli:
Method for quantitative assessment of atherosclerotic lesion burden on the basis of high-resolution black-blood MRI. Image Processing 2002 - [c27]Mariano Rivera, James C. Gee:
Novel spatial interaction prior for Bayesian image segmentation and restoration. Image Processing 2002 - [c26]Peter Rogelj, Stanislav Kovacic, James C. Gee:
Validation of a nonrigid registration algorithm for multimodal data. Image Processing 2002 - [c25]Alexei Manso Corrêa Machado, James C. Gee, Mario Fernando Montenegro Campos:
Substructural Segmentation Based on Regional Shape Differences. SIBGRAPI 2002: 3-10 - 2001
- [j4]Daniel C. Alexander, Carlo Pierpaoli, Peter J. Basser, James C. Gee:
Spatial Transformations of Diffusion Tensor Magnetic Resonance Images. IEEE Trans. Medical Imaging 20(11): 1131-1139 (2001) - [c24]David J. Pettey, James C. Gee:
Using a Linear Diagnostic Function and Non-rigid Registration to Search for Morphological Differences Between Populations: An Example Involving the Male and Female Corpus Callosum. IPMI 2001: 372-379 - [c23]Aljaz Noe, James C. Gee:
Partial Volume Segmentation of Cerebral MRI Scans with Mixture Model Clustering. IPMI 2001: 423-430 - [c22]Brian B. Avants, Marcelo Siqueira, James C. Gee:
Computing Match Functions for Curves in R2 and R3 by Refining Polyline Approximations. MICCAI 2001: 1178-1179 - [c21]Vikram Chalana, Lydia Ng, Larry R. Rystrom, James C. Gee, David R. Haynor:
Validation of brain segmentation and tissue classification algorithm for T1-weighted MR images. Image Processing 2001 - [c20]Alexei Manso Corrêa Machado, James C. Gee, Mario F. M. Campos:
Factor analysis of high-dimensional heterogeneous data for structural characterization. Image Processing 2001 - [c19]Aljaz Noe, Stanislav Kovacic, James C. Gee:
Segmentation of cerebral MRI scans using a partial volume model, shading correction, and an anatomical prior. Image Processing 2001 - [c18]David J. Pettey, James C. Gee:
Characterizing populations and searching for diagnostics via elastic registration of MRI images. Image Processing 2001 - 2000
- [j3]Daniel C. Alexander, James C. Gee:
Elastic Matching of Diffusion Tensor Images. Comput. Vis. Image Underst. 77(2): 233-250 (2000) - [c17]Daniel C. Alexander, Carlo Pierpaoli, Peter J. Basser, James C. Gee:
Techniques for spatial normalization of diffusion tensor images. Image Processing 2000 - [c16]James C. Gee:
Performance evaluation of medical image processing algorithms. Image Processing 2000 - [c15]Alexei Manso Corrêa Machado, James C. Gee, Mario F. M. Campos:
Exploratory and confirmatory factor analysis in morphometry. Image Processing 2000 - [c14]Alexei Manso Corrêa Machado, Mario Fernando Montenegro Campos, James C. Gee:
Probabilistic Intensity Mapping in MRI Image Registration. SIBGRAPI 2000: 74-81
1990 – 1999
- 1999
- [j2]James C. Gee:
On matching brain volumes. Pattern Recognit. 32(1): 99-111 (1999) - [c13]Daniel C. Alexander, James C. Gee, Ruzena Bajcsy:
Similarity Measures for Matching Diffusion Tensor Images. BMVC 1999: 1-10 - [c12]Daniel C. Alexander, James C. Gee, Ruzena Bajcsy:
Elastic Matching of Diffusion Tensor MRIs. CVPR 1999: 1244-1249 - [c11]Alexei Manso Corrêa Machado, Mario Fernando Montenegro Campos, James C. Gee:
Method for Estimating the Intensity Mapping between MRI Images. IPMI 1999: 496-501 - [c10]Alexei Manso Corrêa Machado, James C. Gee, Mario Fernando Montenegro Campos:
Exploratory Factor Analysis in Morphometry. MICCAI 1999: 378-385 - [c9]Daniel C. Alexander, James C. Gee, Ruzena Bajcsy:
Strategies for Data Reorientation during Non-rigid Warps of Diffusion Tensor Images. MICCAI 1999: 463-472 - [c8]James C. Gee, Brian A. Fabella, Siddharth E. Fernandes, Bruce I. Turetsky, Ruben C. Gur, Raquel E. Gur:
New experimental results in atlas-based brain morphometry. Image Processing 1999 - [c7]Alexei Manso Corrêa Machado, Mario F. M. Campos, James C. Gee:
Likelihood estimation in image warping. Image Processing 1999 - 1998
- [c6]Alexei Manso Corrêa Machado, James C. Gee:
Atlas warping for brain morphometry. Image Processing 1998 - [c5]Alexei M. C. Machado, James C. Gee, Mario F. M. Campos:
Density estimation for MR image elastic matching. SIBGRAPI 1998: 320-325 - 1997
- [c4]James C. Gee, David R. Haynor, Lionel Le Briquer, Ruzena Bajcsy:
Advances in elastic matching theory and its implementation. CVRMed 1997: 63-72 - [c3]Lionel Le Briquer, James C. Gee:
Design of a Statistical Model of Brain Shape. IPMI 1997: 477-482 - 1996
- [c2]James C. Gee, David R. Haynor:
Rapid coarse-to-fine matching using scale-specific priors. Image Processing 1996 - 1994
- [c1]James C. Gee, Christian Barillot, Lionel Le Briquer, David R. Haynor, Ruzena Bajcsy:
Matching structural images of the human brain using statistical and geometrical image features. VBC 1994 - 1993
- [j1]James C. Gee, Woodrow Barfield, David R. Haynor, Yongmin Kim:
User Interface Design for Medical Imaging Workstations: Image Display and Processing. Interact. Comput. 5(3): 279-294 (1993)
Coauthor Index
[j66] [j65] [j64] [j61] [j60] [j59] [j58] [c139] [c137] [c136] [c135] [c129] [c128] [c127] [c126] [c124] [c122] [c121] [j55] [j54] [j53] [j50] [c118] [j47] [j46] [j45] [j44] [j42] [c110] [j40] [j39] [j38] [j37] [j35] [j34] [c99] [c96] [c94] [c90] [c88] [c86] [j29] [j27] [j23] [c85] [c84] [c83] [c78] [c75] [c74] [j20] [c69] [c68] [c67] [c64] [c63] [c62] [c61] [p2] [c58] [c56] [c54] [c51] [c49] [c47] [j8] [c45] [c40] [c39] [c38] [c36] [c33] [c29] [c22]
Mario Fernando Montenegro Campos
aka: Mario F. M. Campos
aka: Mario F. M. Campos
Murray Grossman
aka: Murray C. Grossman
aka: Murray C. Grossman
Alexei M. C. Machado
aka: Alexei Manso Corrêa Machado
aka: Alexei Manso Corrêa Machado
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